Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0728
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07620.1 68418.m00873 protein kinase family protein contains ...    31   0.84 
At1g61820.1 68414.m06975 glycosyl hydrolase family 1 protein con...    29   2.6  
At4g23160.1 68417.m03342 protein kinase family protein contains ...    28   4.5  
At1g48740.1 68414.m05454 expressed protein                             25   5.3  
At1g76210.1 68414.m08850 expressed protein contains Pfam profile...    27   7.8  

>At5g07620.1 68418.m00873 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 359

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = -2

Query: 242 SRRWVHYLRVIIKNAASLQHKNGITRKHF*RFSQWNTSLEQHCPFEERESSHGMHFLTHL 63
           SR+W++ LR+ I  + +L H +   +K     +  + ++     FE R S  G+H L +L
Sbjct: 172 SRKWINILRITIGISKALDHLHTGMQKPIVHGNLKSKNVLLSSSFEPRISDFGLHLLLNL 231


>At1g61820.1 68414.m06975 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to beta-mannosidase enzyme (GI:17226270)
           [Lycopersicon esculentum]
          Length = 516

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 153 LKVFACYAILVLQRSCIFDNYS*IMHPTS 239
           +K FA +AIL L +S +F  YS  +H TS
Sbjct: 1   MKTFANFAILFLLQSLLFPLYSSCLHQTS 29


>At4g23160.1 68417.m03342 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 1262

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -3

Query: 211 LSKMQLL-CNTRMA*HANTFNVFHNGTLHLN---NTVRSRNASRATV 83
           LSK  LL C+   A H  T  VFH  T H+    ++VR R+  +AT+
Sbjct: 515 LSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRERSVYQATL 561


>At1g48740.1 68414.m05454 expressed protein
          Length = 393

 Score = 24.6 bits (51), Expect(2) = 5.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 392 RTEFTKAQWCRHIW 351
           R E +KA+WC++ W
Sbjct: 91  RDECSKAKWCKNYW 104



 Score = 21.8 bits (44), Expect(2) = 5.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 281 NLWYTFKNNTTPLSRRWVHY 222
           N W   K+N  PLSR   ++
Sbjct: 102 NYWQKIKSNYQPLSRELYNF 121


>At1g76210.1 68414.m08850 expressed protein contains Pfam profile
           PF03087: Arabidopsis protein of unknown function
          Length = 226

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 79  CIPWLDSRSSNGQCCS 126
           CIPWL+ RSS G   S
Sbjct: 151 CIPWLEKRSSKGSLSS 166


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,190,652
Number of Sequences: 28952
Number of extensions: 260655
Number of successful extensions: 585
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)