Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0726
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    60   1e-10
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    46   3e-06
SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...    41   9e-05
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    41   1e-04
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    40   2e-04
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    39   5e-04
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    31   0.097
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    26   2.8  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   4.8  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   8.4  

>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 60.5 bits (140), Expect = 1e-10
 Identities = 28/59 (47%), Positives = 41/59 (69%)
 Frame = +3

Query: 306 GEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVV 482
           GEVL+++KA  LN++DLI+ +G    P + P + G + AG IE+VGE+V  F+ GD VV
Sbjct: 31  GEVLVKLKAASLNYRDLIITKGLYPLPLQLPVVPGSDGAGIIEKVGEDVEGFEKGDSVV 89


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 46.0 bits (104), Expect = 3e-06
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
 Frame = +3

Query: 267 VKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGE 446
           ++++ K  P      ++I+    GLN+ D  +R G   +P   P+I G E AG +  VG+
Sbjct: 17  LQVITKEIPKPAPNGLVIKNAYAGLNYIDTYLRTGLYTAP--LPYIPGKEAAGVVAAVGD 74

Query: 447 NV-TNFKVGDQVVAL 488
            V  +FKVGD+VV L
Sbjct: 75  KVEADFKVGDRVVYL 89


>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score = 41.1 bits (92), Expect = 9e-05
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
 Frame = +3

Query: 249 LRGLKTVKILKKPEPTVGEG-EVLIRVKACGLNFQDLIV-RQGAI-DSPPKTPFILGFEC 419
           LR      I  +P  T+ +  +V + +KA G+   D+   ++G I D   K P ILG E 
Sbjct: 10  LRKKMDTAIEDRPGQTLTDDHQVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHES 69

Query: 420 AGEIEQVGENVTNFKVGDQVVALP 491
           AG + +VG+ V++ K GD V   P
Sbjct: 70  AGVVVEVGKGVSSLKPGDPVAVEP 93


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 25/60 (41%), Positives = 31/60 (51%)
 Frame = +3

Query: 309 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 488
           EV I++   G+   D     G  D     P ILG E AG +E VG  VT  +VGD V+AL
Sbjct: 39  EVRIKIVNSGVCHTDAYTLSGK-DPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIAL 97


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
 Frame = +3

Query: 255 GLKTVKILKKPEPTVGEG-EVLIRVKACGL-NFQDLIVRQGAIDSPPKTPFILGFECAGE 428
           G   VKI + P+PT+    +V+++  AC + +  D  +  G +    K   ILG E  G 
Sbjct: 44  GPLNVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPGIEKGA-ILGHESCGI 102

Query: 429 IEQVGENVTNFKVGDQVV 482
           + + G+ V N ++GD+VV
Sbjct: 103 VAEKGDEVNNLEIGDRVV 120


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +3

Query: 309 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 488
           EV ++V    +   D     G +D     P +LG E AG +E +GE V N + GD V+ L
Sbjct: 36  EVRVKVDWSAVCHTDAYTLSG-VDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILL 94


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 31.1 bits (67), Expect = 0.097
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +3

Query: 309  EVLIRVKACGL-NFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVA 485
            EV++RVK C + + QD++ +  A+D P  T  I   E   ++  + EN    K+G  +  
Sbjct: 1055 EVVLRVKMCQMGDVQDVLGK--ALDPPSSTNIIRALEKLHQVGALSENEKLTKLGKFLSQ 1112

Query: 486  LP 491
            LP
Sbjct: 1113 LP 1114


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 216 AQGNARRSTYRLRGLKTVK--ILKKPEPTVGEGEVL 317
           AQGN    T  +RGL+T+K  ILK  +  +   E L
Sbjct: 735 AQGNIATKTPHVRGLRTIKKEILKLVDAYISRAEDL 770


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 326 ESLRPKLPRFD-SSSGRHRLSTEDSFHL 406
           +S R  L  F  SS+ RH++STE  FH+
Sbjct: 216 QSFRGPLEPFKYSSTTRHKVSTESIFHV 243


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 427 KSSKLAKMSPILRWATKWWL 486
           +SS L K+ P+LR+  ++WL
Sbjct: 154 RSSHLLKVRPLLRFLIEFWL 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,744,267
Number of Sequences: 5004
Number of extensions: 30505
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)