Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0726
(500 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13) 79 3e-15
SB_27978| Best HMM Match : HycH (HMM E-Value=0.12) 52 3e-07
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) 51 5e-07
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092) 36 0.019
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13) 35 0.043
SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.043
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86) 30 1.2
SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044) 29 2.2
SB_43329| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_59531| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 28 5.0
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) 28 5.0
SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 28 5.0
SB_42667| Best HMM Match : Ribosomal_S9 (HMM E-Value=4.6) 28 5.0
SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_22197| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 28 5.0
SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 28 5.0
SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_26224| Best HMM Match : VWD (HMM E-Value=0) 27 6.6
SB_9859| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_22525| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
Length = 562
Score = 78.6 bits (185), Expect = 3e-15
Identities = 33/78 (42%), Positives = 50/78 (64%)
Frame = +3
Query: 255 GLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIE 434
G +K+ K P +G+V+++V ACG+ F DL+ RQG PK P++ GFEC+G +E
Sbjct: 49 GNNKIKVEKYARPKPMQGQVVVKVHACGVTFADLLQRQGHFPLAPKPPYVCGFECSGVVE 108
Query: 435 QVGENVTNFKVGDQVVAL 488
++GE VT VG +V+ L
Sbjct: 109 ELGEEVTGIDVGARVICL 126
>SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)
Length = 316
Score = 52.0 bits (119), Expect = 3e-07
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 GLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIE 434
G +++ I P P + E EVLIRV LN D + R+G+ PP ILG E +G +E
Sbjct: 37 GPESMYIGDAPRPKLKETEVLIRVHFTALNRADTLQRKGSYPPPPGESEILGLEVSGIVE 96
Query: 435 QVGENVT-NFKVGDQVVAL 488
++G ++ GD+V+AL
Sbjct: 97 ELGSACNLGWRKGDKVMAL 115
>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
Length = 796
Score = 51.2 bits (117), Expect = 5e-07
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Frame = +3
Query: 312 VLIRVKACGLNFQDLIVRQGAIDSPPKT---PFILGFECAGEIEQVGENVTNFKVGDQV 479
V+++ ACG+N+ D+ +R G +S K P GFE +G I+ GENVT F++G +V
Sbjct: 40 VVVKTFACGVNYADICIRWGLYESAKKFVGWPITPGFEFSGVIQWKGENVTEFEIGQEV 98
>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 395
Score = 45.6 bits (103), Expect = 2e-05
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +3
Query: 267 VKILKKPEPTVGE-GEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVG 443
+ ++ +P P V EV+++V G+ +DL + +G + P +LG E +G + VG
Sbjct: 60 LSVITRPVPHVSNPSEVIVKVAYSGICDRDLQILEGEL--PAAKCVVLGHEFSGVVSDVG 117
Query: 444 ENVTNFKVGDQVVALP 491
+V N +GD+VV P
Sbjct: 118 SDVKNVSIGDRVVVNP 133
>SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +3
Query: 309 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 488
+VLI++ A ++ + +R G+ P+ PF G AG I +G+ VT KVGD V L
Sbjct: 289 QVLIKLSAASVSPVETYIRSGSYARLPELPFTPGNYGAGIIHAIGDEVTKHKVGDHVYTL 348
>SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 348
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +3
Query: 267 VKILKKPEPTV-GEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVG 443
+ ++ +P P V +V++++ ++ DL V +G ID ILG + G ++++G
Sbjct: 12 LSVITRPTPHVQSPRDVVVKIAYSAVSGTDLHVLEGRIDCAKS--IILGHQFVGIVKEIG 69
Query: 444 ENVTNFKVGDQVVALP 491
+V + VGD+VV P
Sbjct: 70 ADVQHVSVGDRVVINP 85
>SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)
Length = 676
Score = 35.9 bits (79), Expect = 0.019
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +3
Query: 228 ARRSTYRLRGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFIL 407
+R ST ++TV K EP G EVL++ + G+N D+ G K PF
Sbjct: 16 SRLSTNFREAVETVSA-KMLEP--GPEEVLVKTRYAGINATDINHTAGRYKPWNKPPFDA 72
Query: 408 GFECAGEIEQVGENVT-NFKVGDQVV 482
G E GE+ G++ F VG V+
Sbjct: 73 GLEGLGEVVATGKDYKGKFSVGQPVM 98
>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
Length = 303
Score = 34.7 bits (76), Expect = 0.043
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +3
Query: 396 PFILGFECAGEIEQVGENVTNFKVGDQVVALPRVP 500
P +LG E +G I VGE V++ K GD+V P P
Sbjct: 52 PMVLGHESSGVICAVGEGVSDLKEGDRVAIEPGTP 86
>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 34.7 bits (76), Expect = 0.043
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +3
Query: 309 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFK 464
EV I++ A G+ D G +D P ILG E G +E VGE VT K
Sbjct: 30 EVRIKILATGVCHTDAYTLSG-VDPEGLFPCILGHEGGGIVESVGEGVTKVK 80
>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
Length = 1110
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 305 GRGPDSRESLRPKLPRFDSSSGRHRLSTED 394
GRG D +R +LP DSS R S ED
Sbjct: 1055 GRGRDKGRQMRTRLPSIDSSRSMGRSSDED 1084
>SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044)
Length = 527
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 291 PTVGEGEVLIRVKACGLN 344
P V EG V++++KACGL+
Sbjct: 316 PQVDEGSVVVKIKACGLD 333
>SB_43329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 391 FGGESMAP*RTIKSWKFRPQAFTRIRTSPSPT 296
FG + +P TIKSW ++PQ TR +P T
Sbjct: 74 FGIDGTSP-PTIKSWCYKPQTVTRSSKTPVKT 104
>SB_59531| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 323
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 493 RGRATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 392
R A TWSPTL +T +P S+S + ++G+
Sbjct: 50 RVSAATWSPTLATLTANPPKSLSKSCGVVNIQGL 83
>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
Length = 1075
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 493 RGRATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 392
R A TWSPTL +T +P S+S + ++G+
Sbjct: 163 RVSAATWSPTLATLTANPPKSLSKSCGVVNIQGL 196
>SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 998
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 493 RGRATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 392
R A TWSPTL +T +P S+S + ++G+
Sbjct: 255 RVSAATWSPTLATLTANPPKSLSKSCGVVNIQGL 288
>SB_42667| Best HMM Match : Ribosomal_S9 (HMM E-Value=4.6)
Length = 179
Score = 27.9 bits (59), Expect = 5.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 314 DLALTNGRLRFFEYLNGLETPKPVST 237
+LAL RLR+F ++ + P PVS+
Sbjct: 122 ELALRKARLRWFRHVERAQAPNPVSS 147
>SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 493 RGRATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 392
R A TWSPTL +T +P S+S + ++G+
Sbjct: 439 RVSAATWSPTLATLTANPPKSLSKSCGVVNIQGL 472
>SB_22197| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 528
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 493 RGRATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 392
R A TWSPTL +T +P S+S + ++G+
Sbjct: 255 RVSAATWSPTLATLTANPPRSLSKSCGVVNIQGL 288
>SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 870
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 493 RGRATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 392
R A TWSPTL +T +P S+S + ++G+
Sbjct: 255 RVSAATWSPTLATLTANPPRSLSKSCGVVNIQGL 288
>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 493 RGRATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 392
R A TWSPTL +T +P S+S + ++G+
Sbjct: 539 RVSAATWSPTLATLTANPPKSLSKSCGVVNIQGL 572
>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
Length = 736
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Frame = +3
Query: 3 SCRPVLSSGLHLQPNATRLDPPA--PY 77
+C L HLQP+ TR PPA PY
Sbjct: 116 TCNQTLPGIYHLQPDPTRYTPPATRPY 142
>SB_9859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 27.5 bits (58), Expect = 6.6
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Frame = +3
Query: 303 EGEVLIRVKACGLNFQDLIVRQG----------AIDSPPKTPFILGFECAGEIEQVGENV 452
+ EVL++V A +N D+ +R+G + + P I G + +G + + G V
Sbjct: 28 DAEVLVKVHASSVNPIDVEMRRGYGTNLLNTWRKLVGVEEFPLICGRDFSGVVVKTGRRV 87
Query: 453 TNFKVGDQVVALPRV 497
F+ G +V P V
Sbjct: 88 RRFRPGMEVWGTPSV 102
>SB_22525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 674
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 376 STLHRRLLSSWASNALVKSSKLAKMSPILRWATKWWLFP 492
S L +LL W + K ++ P RW WWL P
Sbjct: 240 SILGGKLLGIWIDLNVPKGVRITPFDP--RWMGAWWLGP 276
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,532,906
Number of Sequences: 59808
Number of extensions: 242813
Number of successful extensions: 567
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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