Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0724
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0471 + 22535477-22535609,22535714-22535808,22535929-225360...    29   2.2  
08_02_0574 - 18867623-18868033,18869751-18870209                       29   3.8  
06_03_0712 + 23803597-23803945,23804118-23805479,23805743-238058...    27   8.7  
06_01_0803 + 6030742-6031038,6031228-6031314,6031620-6031821,603...    27   8.7  

>01_05_0471 +
           22535477-22535609,22535714-22535808,22535929-22536050,
           22536165-22536702,22536774-22538105
          Length = 739

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -3

Query: 549 RHLSTTEYEPLMTSRRAAPSCSGS*CTG-HRSRRSRTGMRDGDHILPVAVEVRLSEVDIA 373
           R L ++  +P++ S RAAP C G    G +RS R           L      R S +D  
Sbjct: 216 RSLPSSSSKPVVLSSRAAPDCGGGGVDGSYRSTRRSVSNESFVGDLDFGQSSRFSSMDFC 275

Query: 372 D 370
           D
Sbjct: 276 D 276


>08_02_0574 - 18867623-18868033,18869751-18870209
          Length = 289

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 540 STTEYEPLMTSRRAAPSCSG-S*CTGHRSRRSRTG 439
           STT   P  TS RAAP+C+G S  TG  S     G
Sbjct: 94  STTASAPTSTSTRAAPACTGRSSSTGLPSTSGHQG 128


>06_03_0712 +
           23803597-23803945,23804118-23805479,23805743-23805811,
           23806050-23806330,23806817-23807076,23807521-23807689,
           23807796-23808068,23808251-23808499
          Length = 1003

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 229 YGAERLLGQQDIALIDEEGYLLRVVVAALGI 137
           YG E    QQ  AL+++EG+ +  V++  G+
Sbjct: 884 YGGEATTTQQRYALVNQEGWAIEEVMSLQGV 914


>06_01_0803 +
           6030742-6031038,6031228-6031314,6031620-6031821,
           6031926-6032047,6032226-6032447
          Length = 309

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 220 ERLLGQQDIALIDEEGYLLRVVVAALGIDVAA 125
           E LLG+++   I  EGYL R+++   G+D+ A
Sbjct: 57  EALLGREEQQHIPMEGYLQRLLLQPDGLDLVA 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,907,007
Number of Sequences: 37544
Number of extensions: 214870
Number of successful extensions: 510
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)