Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0723
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    27   1.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.5  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   9.5  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    25   9.5  

>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 386 SVANTDPSKSSASQNLP--QDRKRDSLRKSGEKLS 484
           SVAN  PSK++A Q L   Q R  D L K  +K++
Sbjct: 527 SVANRIPSKTAALQKLKFFQSRPLDGLNKFSKKIN 561


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 636 TYHFVWYLGLLFKLQKISLVDSFARDCKNILRKLLRMI*SL 514
           TYHF+  L +  ++Q I  +D FA   +N +  LL  + +L
Sbjct: 166 TYHFLSLLNVQLRIQPIWWMDEFAE--RNGIESLLSALRNL 204


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +2

Query: 383 RSVANTDPSKSSASQNLPQDRKRDSLRKSGEKLS 484
           +S  N  PS ++ S+N+  + + D + + G+KL+
Sbjct: 136 KSEINKKPSVNNVSENISVNTEDDKVEEVGQKLN 169


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 69  FNRNTTNRYHGNEYCQNNKMSDARTQLYASYYINSKPRVNILEKNNHIKKESCANPNSH 245
           FN   T    GNE   NN  ++   Q YA+  +N+  R+        ++ +   +P S+
Sbjct: 533 FNPRVTRFNVGNEQFSNNIDNNNYNQPYANATMNNSRRLRTPSGERSMRADLSQSPASY 591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,665
Number of Sequences: 5004
Number of extensions: 48390
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)