Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0723
         (655 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0849 + 21040043-21040199,21040620-21040678,21040925-210424...    29   4.3  
07_03_0369 - 17356806-17356934,17357145-17357278,17357989-173582...    28   7.5  
12_02_0388 - 18486957-18487016,18487286-18489418,18489985-184904...    27   9.9  

>10_08_0849 +
           21040043-21040199,21040620-21040678,21040925-21042494,
           21042583-21042710,21042793-21043033,21043160-21043710
          Length = 901

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = +3

Query: 78  NTTNRYHGNEYCQNNKMS-----DARTQLYASYYINSKPRVNILEKNNHIKKESCANPNS 242
           N  +  HGNE    +K       ++R+   A+ +   K  V IL  NN +  +    PNS
Sbjct: 209 NNPHATHGNEQSPESKGEGLLGENSRSNSRAAQFKEFKDAVEILSSNNELFLKLLQKPNS 268

Query: 243 H 245
           H
Sbjct: 269 H 269


>07_03_0369 -
           17356806-17356934,17357145-17357278,17357989-17358247,
           17358322-17358410,17358644-17358794,17358889-17359032,
           17359358-17359477,17359595-17359769,17359842-17360215
          Length = 524

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 262 ACSCEYYVSRLLFFSLPMLIALRGYFSFTLTCVGEV 369
           +C   Y V  L+F S+  +I  + Y+     CVG +
Sbjct: 328 SCLGAYVVCNLIFSSIETIIGKKNYYDIRKPCVGSL 363


>12_02_0388 -
           18486957-18487016,18487286-18489418,18489985-18490484,
           18490728-18490899
          Length = 954

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -2

Query: 615 LGLLFKLQKISLVDSFARDCKN-ILRKLLRMI*SLDDKLTLR-HTPLSFSPDF 463
           LGLLFKLQ + L  +  R+    IL KL R+   + D  +L+   P SF P F
Sbjct: 601 LGLLFKLQYLLLRSNPIREIPEVILSKLSRL--QVADFCSLQLEQPASFEPPF 651


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,516,254
Number of Sequences: 37544
Number of extensions: 257677
Number of successful extensions: 485
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)