Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0723
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50869| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_26081| Best HMM Match : Ribosomal_S8 (HMM E-Value=3.8)              29   3.3  
SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)                   29   4.4  
SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)          28   7.6  

>SB_50869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 72  NRNTTNRYHGNEYCQNNKMSDARTQLYASYYINSKPRV--NILEKNNHIKKESCANPNSH 245
           N N    Y   E+   N++S  +TQ+Y   Y+N++ +    + ++   + ++  + PN++
Sbjct: 29  NTNVPTGYLNTEHKCTNRVSQHQTQMYQQGYLNTEHKCTNRVPKQRTQMYQQGTSTPNTN 88


>SB_26081| Best HMM Match : Ribosomal_S8 (HMM E-Value=3.8)
          Length = 426

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 72  NRNTTNRYHGNEYCQNNKMSDARTQLYASYYINSKPRV--NILEKNNHIKKESCANPNSH 245
           N N    Y   E+   N++S  +TQ+Y   Y+N++ +    + ++   + ++  + PN++
Sbjct: 272 NTNVPTGYLNTEHKCTNRVSQHQTQMYQQGYLNTEHKCTNRVPKQRTQMYQQGTSTPNTN 331


>SB_9280| Best HMM Match : 7tm_1 (HMM E-Value=0.0027)
          Length = 292

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = +3

Query: 69  FNRNTTNRYHGNEYCQNNKMSDARTQLYASYYINSKPRVNILEKNNHIKKESCAN 233
           F ++  N  H      NN     ++    ++Y N+   +N  + NNH +K +  N
Sbjct: 211 FRKSNDNNNHYRNSNDNNNNHFRKSNDNNNHYRNNNSNINSSDSNNHFRKRNDNN 265


>SB_33068| Best HMM Match : Galactosyl_T (HMM E-Value=5.9e-37)
          Length = 646

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +3

Query: 66  VFNRNTTNRYHGNEYCQNNK--MSDARTQLYASYYINSKPRVNILEKNNHIKK 218
           V + + TN Y GN   Q +K  +S  +T  Y+ Y+I ++ +  I++K   IKK
Sbjct: 293 VSSLDITNEY-GNTEKQASKRLLSKVKTAFYSVYHIIARSQDTIIDKLRGIKK 344


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,047,431
Number of Sequences: 59808
Number of extensions: 335650
Number of successful extensions: 921
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)