Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0723
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68342-3|CAA92773.1|  751|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U80448-4|AAB37818.1|  293|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei...    27   8.8  

>Z68342-3|CAA92773.1|  751|Caenorhabditis elegans Hypothetical
           protein F38E11.4 protein.
          Length = 751

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 102 NEYCQNNKMSDARTQLYASYYINSKPRVNILEKNNHI 212
           N+ CQNNK+ +      A  Y NSK   ++  +++++
Sbjct: 245 NQLCQNNKIGEENFPCKAFAYSNSKQECHLTAESSYV 281


>Z49126-5|CAA88940.3| 1270|Caenorhabditis elegans Hypothetical
           protein DH11.3 protein.
          Length = 1270

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +2

Query: 479 LSGVCLRVNLSSRL*IIRKSFLRIFLQSLAN----ESTNEIFCSLN 604
           + GVC++   S  L  IRK FL   L+  AN     S+  I C LN
Sbjct: 139 IQGVCIQRGTSRILDSIRKEFLGAVLRQDANWLDKHSSGSITCQLN 184


>U80448-4|AAB37818.1|  293|Caenorhabditis elegans Hypothetical
           protein F59A3.6 protein.
          Length = 293

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 395 NTDPSKSSASQNLPQDRKRDSLRKSGEKLSGVCLRVNLSSRL 520
           N D S   +S ++ Q+RK  S +  G+KL       +LS++L
Sbjct: 6   NFDTSDGWSSHDISQERKNQSFQSLGDKLPLPVTLASLSTKL 47


>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
           protein.
          Length = 1198

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 401 DPSKSSASQNLPQDRKRDSLRKSGEKLSGVCLRVNLSSR 517
           D   S A  NL  DR++  ++   EK+ G+C  V   S+
Sbjct: 732 DKEASKALVNLAVDRQQGEIKTIAEKMFGICGEVYKESK 770


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,630,298
Number of Sequences: 27780
Number of extensions: 263926
Number of successful extensions: 604
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)