Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0672
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   5.9  

>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 278 RFSFYFFITMF*LLLTKLIYTFILL*KTDNVTGKK*QIN 162
           +F +Y  IT+   LLTKLIY    L    ++  K+ +IN
Sbjct: 65  KFVYYLAITLHTSLLTKLIYCHADLYALQSIKYKRLRIN 103


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 323  IISIFLINTIKRAWFRFSFYFFITMF*LLLTKLIY 219
            +I + L  T+   W     YF++TMF L++   IY
Sbjct: 1426 LIMMLLFGTMT-VWTTHYVYFWVTMFALVICPFIY 1459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,916,119
Number of Sequences: 5004
Number of extensions: 31549
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)