Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0672
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003130-3|AAB54123.1|  849|Caenorhabditis elegans Hypothetical ...    27   9.5  
AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine r...    27   9.5  

>AF003130-3|AAB54123.1|  849|Caenorhabditis elegans Hypothetical
           protein F55A12.5 protein.
          Length = 849

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +3

Query: 246 KHGNKKIKTKSKPRSFDSIYEKNTDD 323
           +H N  I T SK  SFDS  E   DD
Sbjct: 570 RHQNVAISTPSKKESFDSSDEDEEDD 595


>AC084197-28|AAO38573.1|  350|Caenorhabditis elegans Serpentine
           receptor, class v protein13 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -3

Query: 326 GIISIFLINTIKRAWFRFSFYFFITMF*LLLTKLIYTFILL*KTDNVTGKK*QINVAK 153
           G++ +FL   +   +F    +F    +  L+T   + FI+L K  N       INV+K
Sbjct: 167 GLVPVFLDKQMTTIFFSIGGFFLFANYIYLITAYCFLFIILHKR-NAKLNSLSINVSK 223


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,224,175
Number of Sequences: 27780
Number of extensions: 166615
Number of successful extensions: 343
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)