Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0671
         (477 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0LNP5 Cluster: Monofunctional biosynthetic peptidoglyc...    34   1.9  
UniRef50_A5ZU34 Cluster: Putative uncharacterized protein; n=1; ...    33   4.3  
UniRef50_Q5A8X7 Cluster: Protein FYV4, mitochondrial precursor; ...    33   4.3  
UniRef50_UPI0000EBCD12 Cluster: PREDICTED: hypothetical protein;...    32   5.7  
UniRef50_UPI0000E817C7 Cluster: PREDICTED: similar to trh1 prote...    31   10.0 
UniRef50_UPI000069E9E6 Cluster: UPI000069E9E6 related cluster; n...    31   10.0 

>UniRef50_A0LNP5 Cluster: Monofunctional biosynthetic peptidoglycan
           transglycosylase; n=1; Syntrophobacter fumaroxidans
           MPOB|Rep: Monofunctional biosynthetic peptidoglycan
           transglycosylase - Syntrophobacter fumaroxidans (strain
           DSM 10017 / MPOB)
          Length = 274

 Score = 33.9 bits (74), Expect = 1.9
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 236 ILLQWMPPWFWS*LSSLPRQTQQLSAEDSGSHQKCPHRFRP-TSLDPQIKFSQLA*TDQR 412
           +LL+W+ P F    SS   Q +   A  +G  QK  HR+ P T + P I  + LA  DQ 
Sbjct: 52  VLLKWVDPPF----SSFMVQERVRGAFSAGGQQKIRHRWVPLTRVSPHIALAVLAAEDQS 107

Query: 413 F 415
           F
Sbjct: 108 F 108


>UniRef50_A5ZU34 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus obeum ATCC 29174|Rep: Putative
           uncharacterized protein - Ruminococcus obeum ATCC 29174
          Length = 408

 Score = 32.7 bits (71), Expect = 4.3
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 349 PMWTLLMASGVFCGQLLSLTWE 284
           PM  +++ +GV CG+L+ LTWE
Sbjct: 205 PMLRIMLGTGVRCGELIGLTWE 226


>UniRef50_Q5A8X7 Cluster: Protein FYV4, mitochondrial precursor;
           n=3; Saccharomycetales|Rep: Protein FYV4, mitochondrial
           precursor - Candida albicans (Yeast)
          Length = 170

 Score = 32.7 bits (71), Expect = 4.3
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -2

Query: 326 FRSLLRTVVES-DVGAMTAMTRTTVASIEAISVAAYFSAIPIISVKFNPNSYRTTNTV 156
           FR+LL + V S  +  +T+   TT+ SI +I   +YFS  P I+ K N  S RT   V
Sbjct: 2   FRTLLSSTVRSIQLKPVTSTLSTTIPSITSIPTVSYFSTSP-INYKTN-TSTRTKENV 57


>UniRef50_UPI0000EBCD12 Cluster: PREDICTED: hypothetical protein;
           n=1; Bos taurus|Rep: PREDICTED: hypothetical protein -
           Bos taurus
          Length = 393

 Score = 32.3 bits (70), Expect = 5.7
 Identities = 21/61 (34%), Positives = 27/61 (44%)
 Frame = +2

Query: 290 RQTQQLSAEDSGSHQKCPHRFRPTSLDPQIKFSQLA*TDQRFMVILQ*PVENHPQLWTTP 469
           R  + LS   +  H  C H  RP  L PQ++ +    T  R       P+  HPQL  TP
Sbjct: 38  RLPRGLSTSTAPGHSICTHNSRPLCLHPQLQATPSTPTALR-------PLYLHPQLQATP 90

Query: 470 S 472
           S
Sbjct: 91  S 91


>UniRef50_UPI0000E817C7 Cluster: PREDICTED: similar to trh1 protein;
           n=2; Gallus gallus|Rep: PREDICTED: similar to trh1
           protein - Gallus gallus
          Length = 405

 Score = 31.5 bits (68), Expect = 10.0
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 39  RIQKFLNWCSICDYNFFVLIVYYIFFRAIIL*TTVLTVRYCVCGAVTIWVKFYGYY 206
           +I  ++ W   CD  F +    ++  R ++   TVL   Y    ++ I+  F+GYY
Sbjct: 257 KIFNYMKWKKTCDSLFMIFSAVFLISRLVVFPYTVLYNTYYY--SMEIFQPFFGYY 310


>UniRef50_UPI000069E9E6 Cluster: UPI000069E9E6 related cluster; n=2;
           Xenopus tropicalis|Rep: UPI000069E9E6 UniRef100 entry -
           Xenopus tropicalis
          Length = 279

 Score = 31.5 bits (68), Expect = 10.0
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 215 PRNMRPPILLQWMPPWFWS*LSSLP-RQTQQLSAEDSGSHQKCP 343
           P+N+ PP     +PP   + + S+P RQ  QL  EDS  H +CP
Sbjct: 129 PQNV-PPRQCPQLPPEDSAPIHSVPPRQCPQLPPEDSAPHTQCP 171


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 423,043,664
Number of Sequences: 1657284
Number of extensions: 7221462
Number of successful extensions: 17292
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17287
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26870548160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)