Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0671
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    29   0.48 
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    26   2.6  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   5.9  

>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +3

Query: 3   RTGERTNTYTQIRIQKFLNW 62
           R G++T T T+ R+Q+F+NW
Sbjct: 477 RNGKKTPTRTKSRMQQFINW 496


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +3

Query: 75  DYNFFVL--IVYYIFFRAIIL*TTVLTVRYCVCGAVTIWVKFYGYYRDCREICG 230
           DY F +   + Y IFF  I      LT+    C   T+    Y  YR+ R + G
Sbjct: 215 DYYFCLTATVQYAIFFSTISRVGLALTILVFPCTIATLMTCRYAVYRENRALLG 268


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 39  RIQKFLNWCSICDYNFFVLIVYYIFFR 119
           ++ K+L +  ICDY F + +  +++ R
Sbjct: 272 KMLKYLGFGKICDYLFGIFVASWVYSR 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,753,993
Number of Sequences: 5004
Number of extensions: 30425
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)