Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0671
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245...    27   5.9  
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362...    27   7.8  

>08_01_0002 -
           20208-20594,21525-21671,21754-21917,22005-22162,
           24533-24826,24916-25121,25216-25812,26366-27097
          Length = 894

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 108 IFFRAIIL*TTVLTVRYCVCGAVTIWVKFYGYYRD 212
           +FFR II   TV  +   +   + IW  F+G+  D
Sbjct: 360 LFFRGIINLVTVANISVNLINVIAIWPLFFGWSVD 394


>02_01_0500 -
           3623837-3624019,3624591-3624778,3625209-3626147,
           3626311-3626479,3626701-3626871,3626948-3627016,
           3627094-3627201,3627844-3627997,3628659-3628738,
           3628822-3628914,3628951-3629073,3629165-3629915,
           3630123-3630163,3630338-3630385
          Length = 1038

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 254 ASIEAISVAAYFSAIPIISVKFNPNSYRTTNTVPHSKYSRSQN 126
           A+IEA S +  + AI     ++NP+    +N+ P S  S  Q+
Sbjct: 536 AAIEAASFSQQYDAIGWAPKEYNPDDKLNSNSEPQSSGSAPQS 578


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,335,407
Number of Sequences: 37544
Number of extensions: 201011
Number of successful extensions: 390
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)