Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0671
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-2|AAF40009.1|  562|Caenorhabditis elegans Acetylcholine...    30   0.75 
AF024503-9|AAG24084.1|  327|Caenorhabditis elegans Serpentine re...    29   2.3  
Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha ki...    27   7.0  
AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic tr...    27   7.0  
AY714241-1|AAV68307.1|  529|Caenorhabditis elegans SPD-1 protein.      27   9.2  
AC024756-3|AAT81176.1|  529|Caenorhabditis elegans Spindle defec...    27   9.2  

>AC006834-2|AAF40009.1|  562|Caenorhabditis elegans Acetylcholine
           receptor protein 6 protein.
          Length = 562

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 60  WCSICDYNFFVLIVYYIFFRAIIL*TTVLTVRYCVC-GAVTIWV 188
           W   CDY   + I YY+  R   L  TV  +  CVC  ++T+WV
Sbjct: 210 WYPCCDYP-SIDITYYLHIRRKKLFYTVNMIIPCVCLASMTLWV 252


>AF024503-9|AAG24084.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein266 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 42  IQKFLNWCSICDYNFFVLIVYYIFFRAII 128
           +  F  WC +CD+   V+ + Y+ F A++
Sbjct: 44  MMNFHAWCILCDWMLAVMTIPYLLFPAMV 72


>Z68104-8|CAA92117.1| 1077|Caenorhabditis elegans Hypothetical
           protein F46C3.1 protein.
          Length = 1077

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 281 SLPRQTQQLSAEDSGSHQKCPHRFRPTSLDP 373
           S PR  + LS+ +S   +   HR R TS  P
Sbjct: 482 SSPRMIEHLSSTESAETESASHRTRTTSFAP 512


>Z66563-4|CAA91470.1| 1077|Caenorhabditis elegans Hypothetical
           protein F46C3.1 protein.
          Length = 1077

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 281 SLPRQTQQLSAEDSGSHQKCPHRFRPTSLDP 373
           S PR  + LS+ +S   +   HR R TS  P
Sbjct: 482 SSPRMIEHLSSTESAETESASHRTRTTSFAP 512


>AF435953-1|AAL30829.1| 1077|Caenorhabditis elegans eIF2 alpha
           kinase protein.
          Length = 1077

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 281 SLPRQTQQLSAEDSGSHQKCPHRFRPTSLDP 373
           S PR  + LS+ +S   +   HR R TS  P
Sbjct: 482 SSPRMIEHLSSTESAETESASHRTRTTSFAP 512


>AF193341-1|AAF61201.1| 1077|Caenorhabditis elegans eukaryotic
           translation initiationfactor 2 alpha kinase PEK protein.
          Length = 1077

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 281 SLPRQTQQLSAEDSGSHQKCPHRFRPTSLDP 373
           S PR  + LS+ +S   +   HR R TS  P
Sbjct: 482 SSPRMIEHLSSTESAETESASHRTRTTSFAP 512


>AY714241-1|AAV68307.1|  529|Caenorhabditis elegans SPD-1 protein.
          Length = 529

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 230 AAYFSAIPIISVKFNPNSYRTTNTVPHSKYSRSQNNR 120
           A +   + I   +  PN Y+TTN +P +K  R   N+
Sbjct: 318 AVWTEKLTIDEKRKQPNYYKTTNVLPDNKRERELLNQ 354


>AC024756-3|AAT81176.1|  529|Caenorhabditis elegans Spindle
           defective protein 1 protein.
          Length = 529

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 230 AAYFSAIPIISVKFNPNSYRTTNTVPHSKYSRSQNNR 120
           A +   + I   +  PN Y+TTN +P +K  R   N+
Sbjct: 318 AVWTEKLTIDEKRKQPNYYKTTNVLPDNKRERELLNQ 354


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,795,522
Number of Sequences: 27780
Number of extensions: 175376
Number of successful extensions: 398
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)