Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0671
         (477 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16280.1 68418.m01901 expressed protein                             29   1.6  
At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR...    27   5.0  
At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR...    27   5.0  
At2g27060.1 68415.m03251 leucine-rich repeat transmembrane prote...    27   6.6  

>At5g16280.1 68418.m01901 expressed protein
          Length = 1265

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 227  RPPILLQWMPPWFWS*LSSLPRQTQQLSAED 319
            +PP  ++  PP+ WS LSS   Q Q LS  +
Sbjct: 1186 KPPSSMESSPPFIWSGLSSTKIQIQPLSTTE 1216


>At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.; closest
            homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
          Length = 1404

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 130  CERLYLLCGTVFVVR*LFGLNFTDIIGIAEKYA-ATDIASMDATVVLV 270
            C+RL  +   +F +R L   +FTD  G+ +  + AT +A+M+ +V  V
Sbjct: 1130 CQRLKNISPNIFRLRSLMFADFTDCRGVIKALSDATVVATMEDSVSCV 1177


>At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.; closest
            homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
          Length = 1449

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +1

Query: 130  CERLYLLCGTVFVVR*LFGLNFTDIIGIAEKYA-ATDIASMDATVVLV 270
            C+RL  +   +F +R L   +FTD  G+ +  + AT +A+M+ +V  V
Sbjct: 1130 CQRLKNISPNIFRLRSLMFADFTDCRGVIKALSDATVVATMEDSVSCV 1177


>At2g27060.1 68415.m03251 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1007

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +1

Query: 226 AATDIASMDATVVLVIAVIAPTSDSTTVRRRLRKPXXXXXXXXXXXXXXTDQVLSTSVNR 405
           + T   S+ A + +  +  +  SDS      L++P              + QV S++ + 
Sbjct: 620 STTSTPSIKAKLPVSSSRFSQYSDSENSSPFLKEPNEELHSESRKDEILSSQVSSSTPSL 679

Query: 406 PKIHGHP-TITSRKSSPALDNSI 471
           PKI   P   TSR++S  LD ++
Sbjct: 680 PKIQNSPDNPTSRQTSMRLDGNL 702


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,174,779
Number of Sequences: 28952
Number of extensions: 161343
Number of successful extensions: 345
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)