Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0670
         (461 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   3.2  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    20   9.7  

>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 446 VKYSPQALFEEGYAIVFGKHLWMGVIVFYLSD*F 345
           +K   Q   ++ YA+ F   L +GV+V   S  F
Sbjct: 23  IKLEKQTFIQKFYAVAFFLALSIGVVVSIYSKSF 56



 Score = 21.8 bits (44), Expect = 3.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -1

Query: 410 YAIVFGKHLWMGVIVFY 360
           Y   FG HL  GV++ Y
Sbjct: 117 YYAFFGVHLAYGVVIIY 133


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 97  QDGRQHKSFSFQYLINTK*TINIHKHVSR 183
           Q GR+     F ++   K T  + KHV +
Sbjct: 401 QCGRRADVLKFWFMWKAKGTSGLEKHVDK 429


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,668
Number of Sequences: 336
Number of extensions: 2172
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10616413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)