Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0670
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    29   0.46 
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    26   2.4  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    25   7.4  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    24   9.8  

>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 28.7 bits (61), Expect = 0.46
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 168 MYVNC--SFSVD*VLETKTFMLPSILKCDDKVSQLCCMIYLASTTYWLGSGSAVVV 7
           MY++C   F  D VL   +  LPSILK +   S L    Y++   Y LG  S  V+
Sbjct: 273 MYMSCVIQFCQDLVLYGISTFLPSILKLELGYSSLAAQ-YMSVPVYALGGISVYVI 327


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 195 FHSGA*HMFMYVNCSFSVD*VLETKTFMLPS 103
           +H G  +M + + C   +D +L   TF+LPS
Sbjct: 142 YHYGGVYMDLDIGCKKPMDPLLSKATFILPS 172


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -3

Query: 153 SFSVD*--VLETK-TFMLPSILKCDDKVSQLCCMIYLASTTYW 34
           +FSVD    L TK T     +LK  D+    CC IYLAS  +W
Sbjct: 612 NFSVDDYDTLITKCTLYASKLLKKPDQ----CCGIYLASHLWW 650


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 318 TVSNKLKLNELIG*IEDNNSHPQVFPKHYSISFFKQSLW 434
           T +NK  +N L+  + + +S+   FPKH  I  +    W
Sbjct: 517 TGNNKEWVNFLVRDVANPSSNDPYFPKHRMIDIYHGHGW 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,653
Number of Sequences: 5004
Number of extensions: 35196
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)