Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0670
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188...    30   1.0  
03_05_0431 + 24221881-24224586                                         27   5.6  
03_03_0033 + 13933562-13933886,13933945-13934069                       27   5.6  

>10_01_0167 +
           1876793-1877402,1877423-1877642,1877760-1879534,
           1880019-1880199,1881313-1881529
          Length = 1000

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 379 WELLSSIYPINSFSLSLFDTVILDCDEACCL 287
           W+ +S ++P N  S+ +  T I D   +CCL
Sbjct: 291 WKAISVVFPENGSSIIIVTTRISDVGRSCCL 321


>03_05_0431 + 24221881-24224586
          Length = 901

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 81 VSQLCCMIYLASTTYWLGSGSAVVVS 4
          V+  CC++ L S  Y LGS +++ VS
Sbjct: 7  VALCCCLVLLPSWAYGLGSMASIAVS 32


>03_03_0033 + 13933562-13933886,13933945-13934069
          Length = 149

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 218 IFIIQLAGFTAERDTCLCMLIVHLVLIRYWKLKLLCCRPS*NV 90
           IF   ++GFT     C C++   +V +R   L  L C  S N+
Sbjct: 35  IFAFNISGFTDYVGLCQCLVFAQVVGLRRCLLFCLTCWASPNI 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,095,248
Number of Sequences: 37544
Number of extensions: 191051
Number of successful extensions: 309
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)