Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0670
         (461 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)                    27   5.7  
SB_46609| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_27653| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   10.0 
SB_3312| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   10.0 

>SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)
          Length = 872

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 242 LLLITRNFIFIIQLAGFTAERDTCLCMLIVHLVL 141
           LL +T NF+ ++ L      R + LC+ +++L+L
Sbjct: 144 LLAVTSNFLVLLTLLCNKEARTSALCLFVMNLLL 177


>SB_46609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 289 LFLSLIINNAITCSRCCY*LQETLY 215
           L+   +IN++++CSR C  L +T++
Sbjct: 79  LYRRCVINDSVSCSRTCQSLAQTIH 103


>SB_27653| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 416

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -3

Query: 408 CYSVWETLVDGSYCLLFIRLIHLV*AYSIPLFLIVM 301
           CY  WE L D     +   L   V  Y+ PL LI +
Sbjct: 178 CYEKWEPLFDTHKASVHYTLFLFVVQYAAPLLLITV 213


>SB_3312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 769

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
 Frame = +1

Query: 373 TPIH--KC-FPNTIAYPSS--NKACGEYL 444
           TP+H   C +PNT+ YPS   ++AC E L
Sbjct: 329 TPLHFQLCKYPNTVIYPSDEISQACNEIL 357


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,265,108
Number of Sequences: 59808
Number of extensions: 237355
Number of successful extensions: 617
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)