Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0670
         (461 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR...    27   4.7  
At5g17410.2 68418.m02043 tubulin family protein similar to spind...    27   8.2  
At5g17410.1 68418.m02042 tubulin family protein similar to spind...    27   8.2  

>At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1031

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 87  DKVSQLCCMIYLASTTYWLGSGSAVVVS 4
           D V+ +  +  LA+ T W GSGS +VV+
Sbjct: 297 DDVNHIMQLEALANETTWFGSGSRIVVT 324


>At5g17410.2 68418.m02043 tubulin family protein similar to spindle
           pole body protein [Homo
           sapiens][GI:2801701][PMID:9566967], gamma-tubulin ring
           protein Dgrip84 [Drosophila
           melanogaster][GI:4689225][PMID: 10037793]
          Length = 679

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 150 FSVD*VLETKTFMLPSILKCDDKVSQLCCMIYLASTTYWLGSGS 19
           F +D  L     +LP +LK  +K+  +C  +  A+ T WL S S
Sbjct: 574 FFLDKCLRGCLLLLPDVLKKMEKLKSVC--LQYAAATQWLISSS 615


>At5g17410.1 68418.m02042 tubulin family protein similar to spindle
           pole body protein [Homo
           sapiens][GI:2801701][PMID:9566967], gamma-tubulin ring
           protein Dgrip84 [Drosophila
           melanogaster][GI:4689225][PMID: 10037793]
          Length = 678

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 150 FSVD*VLETKTFMLPSILKCDDKVSQLCCMIYLASTTYWLGSGS 19
           F +D  L     +LP +LK  +K+  +C  +  A+ T WL S S
Sbjct: 573 FFLDKCLRGCLLLLPDVLKKMEKLKSVC--LQYAAATQWLISSS 614


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,274,987
Number of Sequences: 28952
Number of extensions: 167781
Number of successful extensions: 326
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)