Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0668
         (384 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   1.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   1.8  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    22   2.4  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 171 LPRGPCSVPGRPSCLPRGPCSV 236
           L    C VPG  +   R PCS+
Sbjct: 190 LTNAVCFVPGVVAMFSRKPCSI 211


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 171 LPRGPCSVPGRPSCLPRGPCSV 236
           L    C VPG  +   R PCS+
Sbjct: 190 LTNAVCFVPGVVAMFSRKPCSI 211


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +3

Query: 210 CLPRGPCSVPGRPSCYHTSPLRYSSAESVSSQNIVRH 320
           C P G       P   HT   + S  +   S+ I+RH
Sbjct: 56  CTPDGAELKRHLPDALHTECSKCSETQKNGSKKIMRH 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.125    0.343 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,342
Number of Sequences: 336
Number of extensions: 1253
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8014124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)