Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0668
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   1.3  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   1.3  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    25   5.4  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    25   5.4  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    24   7.1  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    24   7.1  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    24   9.4  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 252  CYHTSPLRYSSAESVSSQNIVRHDQPQTIQY 344
            CY +S L  S+A+  S  N++  +QP+  QY
Sbjct: 3728 CYLSSLLETSNAKISSRPNVLMPNQPEVKQY 3758


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +3

Query: 189 SVPGRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESVSSQNIVRHDQ----PQTIQYA 347
           SVP   S +   P   P  PS   T P  YS+  SVSSQ  + H      PQ+ +Y+
Sbjct: 282 SVPSALSSISSTPFMKPSIPSTIPTIPSAYSA--SVSSQPPLTHSYVHPGPQSHKYS 336


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 240 GRPSCYHTSPLRYSSAESVSSQNI 311
           G  SCYH +PLR    ++  S N+
Sbjct: 146 GLVSCYHGNPLRERGIKNSYSHNL 169


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 132 APRCQARCCYPCSLPRGPCSV 194
           APR      + CS+P GPC V
Sbjct: 702 APRILRTSKFLCSIPYGPCVV 722


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +3

Query: 162 PCSLPRGPCSVPGRPSCLPRGPCSVPGRP 248
           P   P G    PG P    RGP    GRP
Sbjct: 517 PTQFPAGG-PAPGYPGMNARGPVPAQGRP 544


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 265 LHSATPRLNLSRPKTSSVMTSPRLSNT 345
           L S T  L L  P+T  V+  PR+ N+
Sbjct: 266 LSSITHMLFLDDPRTQRVLLEPRIDNS 292


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 70  REQPEVQLSTPRPKRTVLRFWR 5
           RE P  +    +P R  L FWR
Sbjct: 199 RENPPTESQPEKPLRRTLYFWR 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.125    0.343 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,265,123
Number of Sequences: 5004
Number of extensions: 19295
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)