Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0668
(384 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g31850.3 68414.m03915 dehydration-responsive protein, putativ... 29 1.4
At1g31850.2 68414.m03914 dehydration-responsive protein, putativ... 29 1.4
At1g31850.1 68414.m03913 dehydration-responsive protein, putativ... 29 1.4
At2g43560.1 68415.m05412 immunophilin / FKBP-type peptidyl-proly... 27 3.3
At1g62780.1 68414.m07086 expressed protein 27 4.3
At1g29080.1 68414.m03560 peptidase C1A papain family protein con... 27 4.3
At4g19120.2 68417.m02822 early-responsive to dehydration stress ... 27 5.7
At4g19120.1 68417.m02821 early-responsive to dehydration stress ... 27 5.7
At3g45540.1 68416.m04918 zinc finger (C3HC4-type RING finger) fa... 27 5.7
At3g09100.2 68416.m01070 mRNA capping enzyme family protein simi... 27 5.7
At5g20980.1 68418.m02494 5-methyltetrahydropteroyltriglutamate--... 26 7.5
At2g43140.1 68415.m05357 basic helix-loop-helix (bHLH) family pr... 26 7.5
At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical... 26 9.9
>At1g31850.3 68414.m03915 dehydration-responsive protein, putative
strong similarity to early-responsive to dehydration
stress ERD3 protein [Arabidopsis thaliana] GI:15320410;
contains Pfam profile PF03141: Putative
methyltransferase
Length = 603
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +3
Query: 174 PRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESVSSQNIVRHD 323
P PC V P G S+P P H +P R S N ++HD
Sbjct: 383 PLRPCVVAPTPKVKKSGLGSIPKWPERLHVAPERIGDVHG-GSANSLKHD 431
>At1g31850.2 68414.m03914 dehydration-responsive protein, putative
strong similarity to early-responsive to dehydration
stress ERD3 protein [Arabidopsis thaliana] GI:15320410;
contains Pfam profile PF03141: Putative
methyltransferase
Length = 603
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +3
Query: 174 PRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESVSSQNIVRHD 323
P PC V P G S+P P H +P R S N ++HD
Sbjct: 383 PLRPCVVAPTPKVKKSGLGSIPKWPERLHVAPERIGDVHG-GSANSLKHD 431
>At1g31850.1 68414.m03913 dehydration-responsive protein, putative
strong similarity to early-responsive to dehydration
stress ERD3 protein [Arabidopsis thaliana] GI:15320410;
contains Pfam profile PF03141: Putative
methyltransferase
Length = 603
Score = 28.7 bits (61), Expect = 1.4
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +3
Query: 174 PRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESVSSQNIVRHD 323
P PC V P G S+P P H +P R S N ++HD
Sbjct: 383 PLRPCVVAPTPKVKKSGLGSIPKWPERLHVAPERIGDVHG-GSANSLKHD 431
>At2g43560.1 68415.m05412 immunophilin / FKBP-type peptidyl-prolyl
cis-trans isomerase family protein identical to Probable
FKBP-type peptidyl-prolyl cis-trans isomerase 2,
chloroplast precursor (Ppiase) (Rotamase)
(SP:O22870)[Arabidopsis thaliana]; contains Pfam
PF00254: peptidyl-prolyl cis-trans isomerase, FKBP-type
Length = 223
Score = 27.5 bits (58), Expect = 3.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 162 PCSLPRGPCSVPGRPSCLPRGP 227
P + P+G S PGRP P P
Sbjct: 184 PLAFPKGLVSAPGRPRVAPNSP 205
Score = 26.6 bits (56), Expect = 5.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 192 VPGRPSCLPRGPCSVPGRPSCYHTSPL 272
+PG P P+G S PGRP SP+
Sbjct: 181 IPG-PLAFPKGLVSAPGRPRVAPNSPV 206
>At1g62780.1 68414.m07086 expressed protein
Length = 237
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 121 HGAQCFGKKRLQRERSAREQPEVQLSTPRPKRTVLR 14
H A+ K+RL+R+ ARE + QL + +R LR
Sbjct: 45 HIARLEFKRRLERDSEAREAFQKQLREEKERRQALR 80
>At1g29080.1 68414.m03560 peptidase C1A papain family protein
contains similarity to cysteine protease SPCP1
GI:13491750 from [Ipomoea batatas]; contains Pfam
profile PF00112: Papain family cysteine protease
Length = 346
Score = 27.1 bits (57), Expect = 4.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 159 YPCSLPRGPCSVPGRPSCLPRGPCSVP 239
YP + GPC RP+ L RG +VP
Sbjct: 217 YPYQVKEGPCRSNARPAILIRGFENVP 243
>At4g19120.2 68417.m02822 early-responsive to dehydration stress
protein (ERD3) identical to ERD3 protein [Arabidopsis
thaliana] GI:15320410; contains Pfam profile PF03141:
Putative methyltransferase; identical to cDNA ERD3
GI:15320409
Length = 600
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +3
Query: 174 PRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESVSSQNIVRHD 323
P PC V P S P P HT+P R S + N+ +HD
Sbjct: 377 PLRPCVVVPSPKLKKTDLESTPKWPERLHTTPERISDVPG-GNGNVFKHD 425
>At4g19120.1 68417.m02821 early-responsive to dehydration stress
protein (ERD3) identical to ERD3 protein [Arabidopsis
thaliana] GI:15320410; contains Pfam profile PF03141:
Putative methyltransferase; identical to cDNA ERD3
GI:15320409
Length = 600
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +3
Query: 174 PRGPCSVPGRPSCLPRGPCSVPGRPSCYHTSPLRYSSAESVSSQNIVRHD 323
P PC V P S P P HT+P R S + N+ +HD
Sbjct: 377 PLRPCVVVPSPKLKKTDLESTPKWPERLHTTPERISDVPG-GNGNVFKHD 425
>At3g45540.1 68416.m04918 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature
Length = 348
Score = 26.6 bits (56), Expect = 5.7
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Frame = +3
Query: 138 RCQARCCYPCSLPRGPC----SVPGRPSCLPRGPCSVPGRPSC 254
RC + CY C + G C +P RP P P P C
Sbjct: 283 RCGHKFCYRCGVQAGGCKHGHGLPPRPPPPPPSPPPTPVNICC 325
>At3g09100.2 68416.m01070 mRNA capping enzyme family protein similar
to mRNA capping enzyme [Xenopus laevis] GI:7239232;
contains Pfam profiles PF01331: mRNA capping enzyme
catalytic domain, PF00782: Dual specificity phosphatase
catalytic domain
Length = 672
Score = 26.6 bits (56), Expect = 5.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +2
Query: 38 RCRKLDFWLLPCTTLPLKPFLP 103
R R+ DFWLL LK F+P
Sbjct: 496 RVRRKDFWLLSAVEKVLKGFIP 517
>At5g20980.1 68418.m02494
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase, putative / vitamin-B12-independent
methionine synthase, putative / cobalamin-independent
methionine synthase, putative strong similarity to
SP|O50008
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
methionine synthase isozyme) (Cobalamin-independent
methionine synthase isozyme) {Arabidopsis thaliana};
contains Pfam profile PF01717: Methionine synthase,
vitamin-B12 independent
Length = 812
Score = 26.2 bits (55), Expect = 7.5
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 168 SLPRGPCSVPGRPSCLPRGPCSVPGR 245
SLPR P S+P S P PC+ R
Sbjct: 14 SLPRRPPSLPPPSSATPSLPCATASR 39
>At2g43140.1 68415.m05357 basic helix-loop-helix (bHLH) family
protein contains Pfam profile PF00010: Helix-loop-helix
DNA-binding domain
Length = 295
Score = 26.2 bits (55), Expect = 7.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 123 VMAHNALGRNGFSGSVVHGSSQKSSFRHRDQSAQYYD 13
++ H G G + SS S FRHR A +YD
Sbjct: 58 LVGHYLPGEPSSIGFDSNASSSSSLFRHRSSPAGFYD 94
>At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical to
EIN2 [Arabidopsis thaliana] gi|5231113|gb|AAD41076;
member of the natural resistance-associated macrophage
protein (NRAMP) metal transporter family, PMID:11500563;
metal transport capacity has not been shown,
PMID:11500563, PMID:1038174
Length = 1294
Score = 25.8 bits (54), Expect = 9.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 249 SCYHTSPLRYSSAESVSSQNIVRHDQPQTI 338
+ Y S RYSS + SS H QP T+
Sbjct: 791 NAYELSERRYSSLRAPSSSEGWEHQQPATV 820
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.125 0.343
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,946,277
Number of Sequences: 28952
Number of extensions: 112399
Number of successful extensions: 407
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
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