Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0666
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    29   0.48 
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   5.9  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    25   7.7  

>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -1

Query: 227 IHYVRLFHEDWLNVRSGEQVSKISSQ 150
           IH ++L+H D+ NVR  E +S + S+
Sbjct: 115 IHMIKLWHNDYSNVRGMESMSSLVSR 140


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 426 ILTCYIFIFS*FVTDFIQILTFARDFF 506
           + TCYI  FS  +++F   +  +R FF
Sbjct: 115 LFTCYIQSFSLLISNFFIAIEVSRSFF 141


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 201 FMKKSYVVDNNRHRYLSTYK 260
           F+KK+ ++D++  +YLST K
Sbjct: 169 FLKKTVIIDDSYLQYLSTVK 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,120,400
Number of Sequences: 5004
Number of extensions: 39732
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)