Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0666
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0331 + 9017291-9019084,9019205-9019402,9020014-9020184,902...    29   2.0  
06_03_0293 + 19212963-19212965,19213900-19214235,19214658-192148...    29   2.6  

>02_02_0331 +
           9017291-9019084,9019205-9019402,9020014-9020184,
           9020292-9020435,9020552-9020764,9020859-9021929,
           9022365-9022391
          Length = 1205

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -1

Query: 209 FHEDWLNVRSGEQVSKISSQDQSSRILRFFFWK---CPANCNERTQD 78
           F+  W+ V SG+ V  +  QDQ  +  + F W     PA  NE+ Q+
Sbjct: 163 FYNGWIPV-SGKWVGDVKQQDQDDQKAKQFQWPIFWMPAGYNEKRQE 208


>06_03_0293 +
           19212963-19212965,19213900-19214235,19214658-19214870,
           19216134-19216408,19216504-19216615,19217181-19217417,
           19217445-19217462
          Length = 397

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +2

Query: 302 TCVWYLSIIFRVTSTSLPFFTN*SVILY----FKTILMNSINVTIDINVLYLHIFIICDR 469
           TC WYL     +T++ L FFT+   IL+    F+T  + S   T D  VL    + I  R
Sbjct: 37  TC-WYLDKKLEITASVLRFFTDIFYILHIIFQFRTGYIASSPTTFDRGVLVEDRYAIAKR 95

Query: 470 LYTDTNF 490
            Y  T F
Sbjct: 96  -YLSTYF 101


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,571,763
Number of Sequences: 37544
Number of extensions: 189680
Number of successful extensions: 341
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)