Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0665
(388 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 27 1.4
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 27 1.4
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 26 1.8
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 4.1
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 25 4.1
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 5.5
SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro... 24 7.2
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 24 7.2
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 24 7.2
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 24 9.6
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 24 9.6
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 24 9.6
>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 1.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 104 SKHEALKTNNNNINHLLERGSRLHQRNQEGNSR 202
S HE L N+N++N +E S+ H + GN R
Sbjct: 166 SMHEGLIENSNSLNQAVESHSKFHGK---GNGR 195
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 26.6 bits (56), Expect = 1.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 92 VCSKSKHEALKTNNNNINHLLERGSRLHQRNQEGNSRWR 208
V + ++ +++K NNN + L G R+H + + WR
Sbjct: 463 VSNTTELKSMKLINNNPSRLFLHGERIHNGDLSNRTVWR 501
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 26.2 bits (55), Expect = 1.8
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +2
Query: 80 TVFGVCSKSKHEALKTNNNNINHLLERGSRLHQRNQEGN 196
TV + SKS+HE + N+ + +LL R + ++ + +
Sbjct: 543 TVESILSKSRHEEYRIANHIVAYLLSRSLKQNKTESDNS 581
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.0 bits (52), Expect = 4.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 207 VNIVLDCLCRKECNHKYSLLKPMGHYILYGSSNIIDQQNKKLL 335
V++VLD KEC K+S + Y L+ + Q+ +K+L
Sbjct: 43 VDMVLDSTS-KECLPKFSFQNKLDFYFLFSDRVLQLQKERKVL 84
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 4.1
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = -1
Query: 301 DDP*R-M*WPIGFR---SEYLWLHSFLQRQSSTMFTPSGVTFLISLV*SAAPLEQVVDVI 134
DDP + + WP+ + + L +F + +ST +P+ + L++ A P+ V V+
Sbjct: 42 DDPEKPLNWPVSIKLLNTALYGLTTFAAQFNSTTMSPT-TSHLVN----AYPIGHEVAVL 96
Query: 133 VVCLQRLVLAFG 98
CL L +AFG
Sbjct: 97 PTCLYILGIAFG 108
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 24.6 bits (51), Expect = 5.5
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +3
Query: 168 DYTNEIRKVTPDGVNIVLDCL 230
DY + ++++P +N+ LDC+
Sbjct: 328 DYESISKEISPIAINLTLDCI 348
>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 172
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +2
Query: 311 RPAKQ-KTSSTLPIHK*QIKQSI 376
RPA Q KT+ TLPIH+ Q +I
Sbjct: 32 RPALQDKTNQTLPIHQNQAFSNI 54
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 24.2 bits (50), Expect = 7.2
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +3
Query: 195 TPDGVNIVLDCLCRKECNHKYSLLKPMGHYILYGSSNIIDQQNKKLLQHYPYISDKL 365
TPD V++ L + K+ +L+ +G Y+ +D+++KK +++ S+ L
Sbjct: 537 TPDAVDVAHKALNTLDEETKHQVLEEIGDYV-----KELDEESKKAIENKDSTSEWL 588
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 24.2 bits (50), Expect = 7.2
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +2
Query: 104 SKHEALKTNNNNINHLLERGSRLHQRNQEGNSRWRKHCAGLSLQKGMQPQVF 259
SKH NNN+ + G + N+R + A +L+KG+ P F
Sbjct: 579 SKHMRSVMNNNSSTDIYALGILFFELLYPFNTRMERASAIANLKKGIFPHDF 630
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 23.8 bits (49), Expect = 9.6
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 263 SEANGPL-HPLWII*HHRPAKQKTS 334
S NG + PL++I H RP KTS
Sbjct: 786 SRENGTIPRPLYVISHLRPLLHKTS 810
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 23.8 bits (49), Expect = 9.6
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 161 GSRLHQRNQEGNSRWRKHCA--GLSLQKGMQPQV 256
GSRLH ++EG R K A GLSL + Q +
Sbjct: 334 GSRLHIWSEEGRKRLHKLLAKMGLSLVECKQTYI 367
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 23.8 bits (49), Expect = 9.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -2
Query: 273 LASEVNTCGCIPFCRDNPAQCLRHLELPS 187
L + V G + +CR Q + HLE S
Sbjct: 160 LVATVRKAGAVFYCRTPQPQAIMHLETSS 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,575,906
Number of Sequences: 5004
Number of extensions: 30342
Number of successful extensions: 103
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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