Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0665
(388 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1123 + 31068959-31069184,31069795-31069951,31072099-310723... 30 0.74
11_01_0314 + 2339241-2339728,2342720-2343608 28 2.2
06_02_0337 - 14638429-14639295,14640281-14640460,14640743-14641831 28 2.2
05_04_0365 + 20659846-20660301 28 3.0
04_04_1043 - 30352002-30352005,30352088-30352522,30353934-303543... 27 5.2
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702... 27 5.2
07_03_1607 + 28119886-28120239,28121097-28121153,28121377-281214... 27 6.9
06_02_0016 - 10623796-10625317,10626493-10627541 27 6.9
05_03_0228 - 10662930-10663417,10663482-10663632 26 9.1
01_01_1198 - 9643469-9643585,9643740-9643805,9643905-9644489,964... 26 9.1
>04_04_1123 +
31068959-31069184,31069795-31069951,31072099-31072319,
31072405-31072525,31072616-31072713,31072904-31073025,
31073199-31073311,31073470-31073565,31073655-31073870,
31073972-31074113,31074208-31074453,31074732-31075040
Length = 688
Score = 29.9 bits (64), Expect = 0.74
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 176 QRNQEGNSRWRKHCAGLSLQKGMQPQVFT 262
QRNQ G+ WR H A Q G P++ T
Sbjct: 22 QRNQRGDGSWR-HAAAAHQQLGSSPEIVT 49
>11_01_0314 + 2339241-2339728,2342720-2343608
Length = 458
Score = 28.3 bits (60), Expect = 2.2
Identities = 23/78 (29%), Positives = 33/78 (42%)
Frame = -1
Query: 247 LHSFLQRQSSTMFTPSGVTFLISLV*SAAPLEQVVDVIVVCLQRLVLAFGADTKHGHVFD 68
LH QRQ F+ S V F + V +A +VD++ L+ + AD GH+
Sbjct: 145 LHVLRQRQPHRRFSESAVRFYAAEVVAALEYVHMVDIVYRDLKPENVLVRAD---GHIML 201
Query: 67 RLRQLGYSLSHTAPSGMH 14
L TAP+ H
Sbjct: 202 TDFDLSLKCDPTAPTPAH 219
>06_02_0337 - 14638429-14639295,14640281-14640460,14640743-14641831
Length = 711
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 95 CSKSKHEALKTNNNNINHLLERGSRLHQRNQEGNSRWRKH 214
C K++ EA+ NNN + + G + + GN+ R+H
Sbjct: 273 CPKTREEAMYMGNNNNGYRPQGGQGWNSTSLHGNADVRRH 312
>05_04_0365 + 20659846-20660301
Length = 151
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 16 AFRWGRCGTSCSPVGEDGRKRDRVWC 93
AFR G CG +P E+ RK D V C
Sbjct: 126 AFRAGLCGGGPAPPLEEDRKNDPVCC 151
>04_04_1043 -
30352002-30352005,30352088-30352522,30353934-30354351,
30355173-30355419
Length = 367
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -3
Query: 134 CCLSSAPRACFWSRHQTRSRFRPSSPTGLQLV-PH 33
C +AP + + RH R R R P QLV PH
Sbjct: 110 CSKEAAPDSKYCERHMHRGRNRSRKPVEAQLVAPH 144
>01_02_0020 -
10269252-10269314,10269442-10269483,10269759-10270244,
10270338-10270421,10270491-10270556,10270718-10270810,
10270901-10271987,10273338-10273362,10273881-10273899
Length = 654
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 257 FTSEANGPLHPLWII*HHRPAKQKTSSTLPIHK*QIKQS 373
F S A P+ P + HH + + T+P+HK + +++
Sbjct: 299 FASTAAAPMAPAVNL-HHEMGRDRAGRTMPVHKTEARKA 336
>07_03_1607 +
28119886-28120239,28121097-28121153,28121377-28121464,
28121557-28121686,28121783-28121962,28122291-28122759
Length = 425
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 107 KHEALKTNNNNINHLLERGSRLHQRNQEGNSRWRKH 214
K ++++ NN+ + L + GS+L +N+ + RW +H
Sbjct: 314 KSKSVRANNSTASLLTQNGSKLVLKNK--SPRWHEH 347
>06_02_0016 - 10623796-10625317,10626493-10627541
Length = 856
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 254 LVVAFLSAETIQHNVYAIWSYLPDFVGV 171
+V+AFL + + N+ A+W L F+ V
Sbjct: 640 VVIAFLLVQLVYFNIQAVWKQLLVFLNV 667
>05_03_0228 - 10662930-10663417,10663482-10663632
Length = 212
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 107 CFWSRHQTRSRFRPSSPTGLQLVPHRP 27
C+ HQ R+ + GLQL PH P
Sbjct: 15 CYHDLHQQRTLLDRARAPGLQLPPHGP 41
>01_01_1198 -
9643469-9643585,9643740-9643805,9643905-9644489,
9645159-9645994,9646597-9646783,9647572-9647737,
9648431-9648520,9649122-9649184,9649277-9649413,
9649835-9650349,9651130-9651231,9651581-9651602
Length = 961
Score = 26.2 bits (55), Expect = 9.1
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +2
Query: 62 KTVENVTVFGVCSKSKHEALKTNNNNINHLLERGSRLHQRNQEGNSRWRKHCAGLSLQKG 241
+T ENV++ + H L +N+ ++ + + G + +R +W KH A S +
Sbjct: 334 ETAENVSLSSSVGCALHGLLGSNSVSLFLITKDGLLVERRLHRRKWKWYKHGAPKSQRLS 393
Query: 242 MQPQVFTSEAN 274
+V E+N
Sbjct: 394 SITEVQQDESN 404
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,515,801
Number of Sequences: 37544
Number of extensions: 213044
Number of successful extensions: 644
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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