Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0665
         (388 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)            50   5e-07
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   33   0.062
SB_34652| Best HMM Match : Ank (HMM E-Value=3.8e-34)                   30   0.76 
SB_19649| Best HMM Match : Keratin_B2 (HMM E-Value=0.082)              29   1.0  
SB_14327| Best HMM Match : NHL (HMM E-Value=0)                         28   2.3  
SB_59081| Best HMM Match : TSP_1 (HMM E-Value=2.5)                     28   3.1  
SB_48571| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_57426| Best HMM Match : Arteri_nucleo (HMM E-Value=7.6)             27   4.0  
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_58720| Best HMM Match : Cupin_5 (HMM E-Value=3.8e-21)               27   7.1  
SB_56000| Best HMM Match : HSA (HMM E-Value=2.8)                       27   7.1  
SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)                 27   7.1  
SB_29817| Best HMM Match : Keratin_B2 (HMM E-Value=6.3)                27   7.1  
SB_22163| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_19726| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_42671| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  

>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
          Length = 562

 Score = 50.4 bits (115), Expect = 5e-07
 Identities = 22/45 (48%), Positives = 31/45 (68%)
 Frame = +3

Query: 168 DYTNEIRKVTPDGVNIVLDCLCRKECNHKYSLLKPMGHYILYGSS 302
           DY  ++R+++PDGV++VLD L   E    Y LLKPMG  I YG++
Sbjct: 233 DYVKKVREISPDGVDLVLDPLGGSETKRCYDLLKPMGALIHYGNA 277



 Score = 37.5 bits (83), Expect = 0.004
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 2   KSLLVHSXXXXXXXXXXXXXKTVENVTVFGVCSKSKHEALK 124
           KS+LVH              K+VE VTVFG  S++KHEA++
Sbjct: 179 KSVLVHMAAGGVGTAVTQICKSVEGVTVFGTASENKHEAIQ 219


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 33.5 bits (73), Expect = 0.062
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = +3

Query: 162 AADYTNEIRKVTPDGVNIVLDCLCRKECNHKYSLLKPMGHYILYGSSNIIDQQNKKLLQH 341
           A D   E + + PDG + V D          Y+ L P G  ++Y +  + +Q+    + H
Sbjct: 206 AQDLWQEAKVICPDGFSAVFDANGVATLKQSYAHLAPGGKLVIYAAVTLGEQEADAAIGH 265

Query: 342 YPYISDK 362
            P +  K
Sbjct: 266 DPLLHGK 272


>SB_34652| Best HMM Match : Ank (HMM E-Value=3.8e-34)
          Length = 1330

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
 Frame = +2

Query: 110 HEALKTNNNNINHLL-ERGSRLHQRNQE-------GNSRWRKHCAGLSLQKGMQPQV 256
           H+A +TNN++I HLL  +G+ ++ RN +         SR  K C  + ++ G    V
Sbjct: 394 HKAAQTNNHSILHLLITKGANINARNNDNVTPLMMAASRGSKDCVRMLMENGADTTV 450


>SB_19649| Best HMM Match : Keratin_B2 (HMM E-Value=0.082)
          Length = 279

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 311 RPAKQKTSSTLPIHK*QIKQSISYQT 388
           +PAK +T+S +P +K  IKQ   YQT
Sbjct: 239 QPAKYQTTSEVPNNKTSIKQKAKYQT 264



 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 311 RPAKQKTSSTLPIHK*QIKQSISYQT 388
           +PAK +T+S  P ++  IKQ   YQT
Sbjct: 163 QPAKYQTTSQAPKNQPSIKQPAKYQT 188


>SB_14327| Best HMM Match : NHL (HMM E-Value=0)
          Length = 725

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 165 ADYTNE-IRKVTPDGVNIVLDCLCRKECNHKYSLLKPMGHYILYGSSNIIDQQNK 326
           ADY N+ I+  TPDGV I +      E   K +LL P G     G + ++ ++ +
Sbjct: 459 ADYNNDRIQLFTPDGVLIRVLTHVITEKGRKIALLSPAGVVFDKGGNLVVAERGR 513


>SB_59081| Best HMM Match : TSP_1 (HMM E-Value=2.5)
          Length = 122

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 25  WGRCGTSCSPVGEDGRKRD 81
           WG C   C  +GE  R RD
Sbjct: 104 WGNCSHECGSIGEQHRHRD 122


>SB_48571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 366

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = -3

Query: 203 IW-SYLPDFVGVVCCPSRAGG*CYCCLSSAPRACFWSRHQTRSRFRPSSPTGLQLVPHRP 27
           +W S LPD++  VC PSR G           R C      T    R S+P   + +  R 
Sbjct: 271 VWPSKLPDYITCVCVPSREGLPSK-LPDLVTRVCVLCSQPTSPSSRISTPIDREFMCTR- 328

Query: 26  QRNARVD 6
           Q N+ VD
Sbjct: 329 QANSSVD 335


>SB_57426| Best HMM Match : Arteri_nucleo (HMM E-Value=7.6)
          Length = 195

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 260 TSEANGPLHPLWII*HHRPAKQKTSSTLP 346
           T  +   LH +W    HRP  QKT + LP
Sbjct: 28  TLRSTNQLHRVWRQTKHRPPTQKTQNKLP 56


>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 62   KTVENVTVFGVCSKSKHEALKTNNNNINHLLERGSRLHQRNQEGNSR 202
            K    + V     +S HEA++   + I HL E  +RL     E N +
Sbjct: 1344 KEASLIDVVNQTDQSSHEAIEHYQHQIEHLTEETTRLMAEVDEKNEQ 1390


>SB_58720| Best HMM Match : Cupin_5 (HMM E-Value=3.8e-21)
          Length = 181

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +2

Query: 119 LKTNNNNINHLLERGSRLHQRNQEGNSRWRKHCAGLSLQKGMQPQV 256
           L  N ++I H    G  +       + +  KH  G  + KG +PQ+
Sbjct: 66  LHQNKSDIAHFFHEGWPIEYTLVSPDGKIEKHILGRDVSKGQEPQL 111


>SB_56000| Best HMM Match : HSA (HMM E-Value=2.8)
          Length = 410

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = +3

Query: 261 LLKPMGH--YILYGSSNIIDQQNKKLLQHYPYISDKLNKVSP 380
           +LKP     Y L   S I+D  N++LL H   I  + +K+ P
Sbjct: 236 ILKPDNRCDYALVVRSTILDAVNRQLLHHGGPIGHRSHKIGP 277


>SB_52713| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-26)
          Length = 333

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 128 NNNNINHLLERGSRLHQRNQEGN 196
           NN+NIN  + R  R  +RN+EG+
Sbjct: 214 NNSNINGNVNRKERRERRNREGS 236


>SB_29817| Best HMM Match : Keratin_B2 (HMM E-Value=6.3)
          Length = 384

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 25  WGRCGTSCSPVGEDGRKRDRVWCLLQKQARG 117
           WG C + C  V ++    DR  C   + ARG
Sbjct: 327 WGVCRSDCIDVNDNRVDTDRATCGRTRDARG 357


>SB_22163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 125 SSAPRACFWSRHQTRSRFRPSSPTGLQLVPHRPQRNAR 12
           +S+ R+ F +RHQ+RS    S      +   RP++  R
Sbjct: 266 TSSERSIFKTRHQSRSESLTSKSRTQNIAESRPEKETR 303


>SB_19726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 128 NNNNINHLLERGSRLHQRNQEGN 196
           NN+NIN  + R  R  +RN+EG+
Sbjct: 77  NNSNINGNVNRKERRERRNREGS 99


>SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 140 CYCCLSSAPRACFWSRHQTRSRFRP 66
           C+C L +  R CF+SR++ R   RP
Sbjct: 278 CFCPLRTTXRKCFYSRNK-RHLLRP 301


>SB_42671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 209 YAIWSYLPDFVGVVCCPSRAGG*CYCCLSSAPRAC 105
           Y IW+ LP   G  C P   GG  Y   +  P  C
Sbjct: 259 YLIWAALPTLYGRYCLP-YMGGTAYLIWAVLPTLC 292


>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 924

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 127 KQQ*HQPPAREGQQTTPTKS 186
           +QQ  QP A++GQQTT T++
Sbjct: 897 QQQQQQPQAQQGQQTTYTQN 916


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,051,635
Number of Sequences: 59808
Number of extensions: 240720
Number of successful extensions: 809
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)