Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0665
         (388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   8.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    20   8.6  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +2

Query: 104 SKHEALKTNNNNINHLLERGSRLHQRNQEGN 196
           +K    + N+N  N   + G+R +   Q GN
Sbjct: 453 NKQNGNRQNDNRQNDNKQNGNRQNDNKQNGN 483



 Score = 21.4 bits (43), Expect = 3.7
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +2

Query: 122 KTNNNNINHLLERGSRLHQRNQEGN 196
           K N N  N   + G+R +   Q GN
Sbjct: 469 KQNGNRQNDNKQNGNRQNDNKQNGN 493



 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = +2

Query: 104 SKHEALKTNNNNINHLLERGSRLHQRNQEGN 196
           +K    + N+N  N   + G++ +   Q GN
Sbjct: 478 NKQNGNRQNDNKQNGNRQNGNKQNDNKQNGN 508


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 74   FRPSSPTGLQLVPHRPQRNARVD 6
            +R  S +G + VP RP+R   VD
Sbjct: 1354 YRGPSASGGRPVPERPERVPTVD 1376



 Score = 21.0 bits (42), Expect = 4.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 100  QKQARGAEDKQQ*HQPPAREG 162
            Q+Q +  + +QQ HQ   REG
Sbjct: 1221 QQQQQQQQQQQQQHQAREREG 1241


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 146 G*CYCCLSSAP 114
           G CY C+S AP
Sbjct: 321 GDCYYCISGAP 331


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 95   RHQTRSRFRPSSPTGLQLVPHRP 27
            + + RS F+ SSP    ++ H P
Sbjct: 1247 QERQRSLFKDSSPATALMLQHAP 1269


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 234 CRDNPAQCL 208
           CRDNPA+ L
Sbjct: 602 CRDNPAERL 610


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 308 DVR*SIEDVMAHWLQK 261
           DVR  ++++M  WL K
Sbjct: 207 DVREEMKNIMKFWLDK 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,809
Number of Sequences: 438
Number of extensions: 2039
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)