Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0665
(388 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 31 0.36
At2g19470.1 68415.m02276 casein kinase, putative similar to case... 29 1.4
At5g54450.1 68418.m06781 hypothetical protein contains Pfam prof... 28 1.9
At2g21240.2 68415.m02525 expressed protein 28 1.9
At2g21240.1 68415.m02524 expressed protein 28 1.9
At5g62860.1 68418.m07889 F-box family protein-related contains T... 28 2.5
At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein ... 28 2.5
At3g54880.1 68416.m06080 expressed protein 27 3.3
At5g61605.1 68418.m07730 expressed protein 27 4.4
At2g34357.1 68415.m04206 expressed protein 27 4.4
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi... 27 5.8
At2g26780.1 68415.m03212 expressed protein contains Pfam profile... 27 5.8
At1g34065.1 68414.m04223 mitochondrial substrate carrier family ... 27 5.8
At5g37140.1 68418.m04458 tRNA-splicing endonuclease positive eff... 26 7.6
At5g25630.1 68418.m03050 pentatricopeptide (PPR) repeat-containi... 26 7.6
At3g57940.1 68416.m06458 expressed protein contains Pfam profile... 26 7.6
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 30.7 bits (66), Expect = 0.36
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 251 QVFTSEANGPLHPLWII*HHRPAKQKTSSTLPIHK*QIKQSIS 379
++FT +G + +W + +P K K TLP K +K S++
Sbjct: 175 RIFTGHQDGKIR-IWKVSKRKPGKHKRVGTLPTFKSMVKSSVN 216
>At2g19470.1 68415.m02276 casein kinase, putative similar to casein
kinase I, delta isoform [Arabidopsis thaliana]
SWISS-PROT:P42158; contains protein kinase domain,
Pfam:PF00069
Length = 433
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 173 HQRNQEGNSRWRKHCAGLSLQKGMQPQVFTSE 268
+Q++Q GN + R H G+ G+ P V SE
Sbjct: 295 YQQSQSGNPQPRPHDGGVGTSSGLNPAVGNSE 326
>At5g54450.1 68418.m06781 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 368
Score = 28.3 bits (60), Expect = 1.9
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = -1
Query: 208 TPSGVTFLISLV*SAAPLEQVVDVIVVCLQRLVLAFGADTKHGHVFDR-LRQLGYSLSHT 32
+P+G TFL+ AP + ++ +V + V+ F D K V+ + + L LS +
Sbjct: 254 SPAGETFLVKWYRKTAPARKTINGMVKMQTKTVMVFKLDEKGNAVYSQDIGDLYIFLSKS 313
Query: 31 AP 26
P
Sbjct: 314 EP 315
>At2g21240.2 68415.m02525 expressed protein
Length = 296
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 101 KSKHEALKTNNNNINHLLERGSRLHQRNQ 187
K +H AL N ++ L ER + +H+RNQ
Sbjct: 33 KEQHNALVMNKKIMSILAERDAAVHERNQ 61
>At2g21240.1 68415.m02524 expressed protein
Length = 296
Score = 28.3 bits (60), Expect = 1.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 101 KSKHEALKTNNNNINHLLERGSRLHQRNQ 187
K +H AL N ++ L ER + +H+RNQ
Sbjct: 33 KEQHNALVMNKKIMSILAERDAAVHERNQ 61
>At5g62860.1 68418.m07889 F-box family protein-related contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 377
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 164 SRLHQRNQEGNSRWRKHCAGLSLQKGMQPQVFTSEANGPLHPLW 295
SRL ++ + RW C GL ++ QVFT GP+ W
Sbjct: 45 SRLPVKSLVKHDRWSNSCDGLFGYDPVEKQVFTL-VGGPMKQQW 87
>At3g45260.1 68416.m04887 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 446
Score = 27.9 bits (59), Expect = 2.5
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 101 KSKHE-ALKTNNNNINHLLERGSRLHQRNQE 190
+S H+ L NNNN N++L+RG +Q E
Sbjct: 290 QSSHQWLLNENNNNNNNILQRGISKNQEEHE 320
>At3g54880.1 68416.m06080 expressed protein
Length = 112
Score = 27.5 bits (58), Expect = 3.3
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = +2
Query: 101 KSKHEALKTNNNNINHLLERGSRLHQRNQE----GNSRWRKHCA 220
K + ++KTN+ N L+ G+++ Q N+E SR RK+ A
Sbjct: 24 KDEKSSVKTNSENTLTLVNHGAKMWQENREKWVGDQSRQRKNTA 67
>At5g61605.1 68418.m07730 expressed protein
Length = 82
Score = 27.1 bits (57), Expect = 4.4
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -3
Query: 173 VVCCPSRAGG*CYCCLSSAPRACFWSRHQTRSRFRPSSPT 54
V C R C+CC + PR CF + S + SP+
Sbjct: 42 VECAKHRNQKWCFCC-AGLPRTCFLDKRGCTSVCKRESPS 80
>At2g34357.1 68415.m04206 expressed protein
Length = 1280
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 296 SIEDVMAHWLQK*ILVVAFLSAETIQHNVYAIWSYLPDF 180
S+ + M+H QK L +++ ++ VY++W+ LP F
Sbjct: 523 SMVETMSHKAQKLKLQGLPVASRSVDSLVYSLWALLPSF 561
>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
tuberosum]
Length = 135
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 113 EALKTNNNNINHLLERGSRLHQRNQEGNSRW 205
+ALK+ + + L E ++L +R + G +RW
Sbjct: 98 DALKSKDKKVTALKEAKAKLEERFKTGKNRW 128
>At2g26780.1 68415.m03212 expressed protein contains Pfam profile TBP
(TATA-binding protein) -interacting protein 120 (TIP120);
contains TIGRFAM profile TIGR01612: reticulocyte binding
protein
Length = 1866
Score = 26.6 bits (56), Expect = 5.8
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = -1
Query: 226 QSSTMFTPSGVTFLISLV*SAAP--LEQVVDVIVVCLQRLVLAFGADTKHGH-VFDRLRQ 56
++ T P+ T ++SL+ SA L++ + CL+++++AFG D K H VF L +
Sbjct: 1612 EAITKEDPTTPTTILSLICSACKKKLKKYRESAFSCLEKVIIAFG-DPKFFHAVFPMLYE 1670
Query: 55 L 53
+
Sbjct: 1671 M 1671
>At1g34065.1 68414.m04223 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 327
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 291 RGCNGPLASEVNTCGCIPFCRDNPAQCLRHL 199
+ N P+ +++N+C I +D+P LR L
Sbjct: 24 KSINDPIKNQINSCAAICVKQDDPCHFLRVL 54
>At5g37140.1 68418.m04458 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 692
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +3
Query: 159 GAADYTNEIR--KVTPDGVNIVLDCLCRKECNHKYSL 263
G+ TN IR K+ +L CL + CNHK+S+
Sbjct: 61 GSDRVTNIIRSAKLNSSQEAAILSCLKIRNCNHKHSV 97
>At5g25630.1 68418.m03050 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 574
Score = 26.2 bits (55), Expect = 7.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 108 LLLEQTPNTVTFSTVFANW 52
L++E PN V F+TV + W
Sbjct: 391 LIVESRPNVVIFTTVISGW 409
>At3g57940.1 68416.m06458 expressed protein contains Pfam profile
PF05127: Putative ATPase (DUF699)
Length = 1024
Score = 26.2 bits (55), Expect = 7.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 282 NGPLASEVNTCGCIPFCRDNPAQC 211
NG L +V TC P C +P+QC
Sbjct: 487 NGLLCLDVATCLPNPACHPSPSQC 510
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,330,451
Number of Sequences: 28952
Number of extensions: 164211
Number of successful extensions: 506
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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