Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0664
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    52   8e-08
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    42   9e-05
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    39   6e-04
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    32   0.073
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    29   0.52 
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   8.4  

>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 51.6 bits (118), Expect = 8e-08
 Identities = 25/68 (36%), Positives = 35/68 (51%)
 Frame = -2

Query: 453 LEQCADKTQLCIDAASYGSAARFMNHSCEASAAAVRVFTRHRDLRLPLVVLFATRDIHPG 274
           L+   D ++  +DA +YG  +RF NHSC  + A       H    +  +  FA +DI P 
Sbjct: 385 LDMFDDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPL 444

Query: 273 EPLTFDSA 250
           E LTFD A
Sbjct: 445 EELTFDYA 452


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 41.5 bits (93), Expect = 9e-05
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = -2

Query: 420 IDAASYGSAARFMNHSCEASAAA--VRVFTRHRDLRLPLVVLFATRDIHPGEPLTFD 256
           +DA   G+ ARF+NHSC  +  A  +RV  + +      +V++A RDI  GE LT+D
Sbjct: 846 VDATKKGNIARFINHSCAPNCIARIIRVEGKRK------IVIYADRDIMHGEELTYD 896


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 24/55 (43%), Positives = 29/55 (52%)
 Frame = -2

Query: 420 IDAASYGSAARFMNHSCEASAAAVRVFTRHRDLRLPLVVLFATRDIHPGEPLTFD 256
           IDA   GS ARF NHSC  +    +     + LR+    +F  RDI  GE LTFD
Sbjct: 245 IDATKRGSLARFCNHSCRPNCYVDKWMVGDK-LRMG---IFCKRDIIRGEELTFD 295


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 31.9 bits (69), Expect = 0.073
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = -2

Query: 471 LGTGPPLEQCADKTQLCIDAASYGSAARFMNHSCEASAAAVRVFTRHRDLRLPLVVLFAT 292
           LG   P       +QL +D+   GS ARF    C++++    V+    +  +P  +L++T
Sbjct: 265 LGAPKPHVFFDSNSQLVVDSRVAGSKARFARKGCQSNSVVSSVYMNGSN-SVPRFILYST 323

Query: 291 RDIHP 277
             I P
Sbjct: 324 THIAP 328


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -2

Query: 393 ARFMNHSCEASAAAVRVFTRHRDLRLPLVVLFATRDIHPGEPL-TFDSATNFG 238
           ARF+NH C A+    R  T  + + L  V     RDI PGE + TF S+  FG
Sbjct: 182 ARFVNHDCNANC---RFNTSGKRIWLRCV-----RDIKPGEEITTFYSSNYFG 226


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 515 KTRPVNCNTTHYRANWVPGPPSSN 444
           + +P   N  H  +  VPGPP+ N
Sbjct: 886 ENKPAESNLNHLTSAKVPGPPAFN 909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,998,635
Number of Sequences: 5004
Number of extensions: 31537
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)