Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0663
(412 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 124 4e-30
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 63 2e-11
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 50 1e-07
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 49 2e-07
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 1e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 35 0.004
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 35 0.004
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 0.86
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe... 26 2.6
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 25 3.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 4.6
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 6.1
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 6.1
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c... 24 8.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 124 bits (300), Expect = 4e-30
Identities = 56/72 (77%), Positives = 61/72 (84%)
Frame = +2
Query: 68 DEEVAALVVDNGSGMCKAGFTGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVKR*GTQQ 247
+EE+AALV+DNGSGMCKAGF GDDAPRAVFPSIVGRPRH G+MVGMGQKDSYV +
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 248 NKFLTLKYPIEH 283
LTLKYPIEH
Sbjct: 62 RGILTLKYPIEH 73
Score = 82.6 bits (195), Expect = 2e-17
Identities = 33/43 (76%), Positives = 35/43 (81%)
Frame = +1
Query: 283 HESFTNWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNPKAN 411
H NWDDME IWHHTFYNEL V P+EHP LLTEAPLNPK+N
Sbjct: 73 HGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSN 115
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 62.9 bits (146), Expect = 2e-11
Identities = 29/65 (44%), Positives = 39/65 (60%)
Frame = +2
Query: 86 LVVDNGSGMCKAGFTGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVKR*GTQQNKFLTL 265
+ +DNGSG KAGF GDD P+ +FP+ VGR +H+ VM QKD +V L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 266 KYPIE 280
+ PIE
Sbjct: 72 QRPIE 76
Score = 45.6 bits (103), Expect = 3e-06
Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = +1
Query: 298 NWDDMENIWHHTFYNE-LHVTPKEHPILLTEAPL 396
NW DME IW + + ++ L+ P+EHP+LLTE PL
Sbjct: 82 NWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 50.4 bits (115), Expect = 1e-07
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +2
Query: 74 EVAALVVDNGSGMCKAGFTGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVKR*GTQQ 247
E A +V+DNG+G K G+ D+ PR FPSIVGRP R + + KD V
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 248 NKFLTLKYPIEH 283
L +KYP+E+
Sbjct: 62 RSLLQVKYPMEN 73
Score = 45.2 bits (102), Expect = 4e-06
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +1
Query: 298 NWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNPKAN 411
++++M +W +TF+ +L + P+ ILLTE P+NP AN
Sbjct: 78 DFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVAN 115
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 49.2 bits (112), Expect = 2e-07
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = +1
Query: 283 HESFTNWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNPKAN 411
H NWD ME W + + L P++H LLTE PLNP N
Sbjct: 96 HGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPEN 138
Score = 41.1 bits (92), Expect = 7e-05
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +2
Query: 86 LVVDNGSGMCKAGFTGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVKR*GT 241
+++DNG+G K G+ G+DAP VFP+++ R G G + K SY+ G+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASKGS 60
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 40.3 bits (90), Expect = 1e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 71 EEVAALVVDNGSGMCKAGFTGDDAPRAVFPSIVG 172
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 39.1 bits (87), Expect = 3e-04
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 298 NWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNPKAN 411
NWD ++W + +L P EHPIL+TE NP N
Sbjct: 76 NWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPEN 113
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 35.1 bits (77), Expect = 0.004
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 71 EEVAALVVDNGSGMCKAGFTGDDAPRAVFPSIVG 172
EE+ +LV+D GS + G+ G+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
Score = 28.7 bits (61), Expect = 0.37
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +1
Query: 298 NWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNPKA 408
+W+ W +L V P E+ +++TE NP++
Sbjct: 79 DWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQS 115
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 35.1 bits (77), Expect = 0.004
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 86 LVVDNGSGMCKAGFTGDDAPRAVFPSIVGRPR 181
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 34.7 bits (76), Expect = 0.006
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 295 TNWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNP 402
+NWD ME + +TF +L + EHPI +TE NP
Sbjct: 93 SNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANP 127
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 0.86
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -2
Query: 225 T*ESFCPI-PTITP*WRGLPTIEGNTARGASSPVKPALHIPEPLSTTNAATSSS 67
T S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 402 TGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 2.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 274 GVFEGQELILLCASSLYIRVLLSHTDH 194
G+FE E+ ++C SL + + SH +H
Sbjct: 266 GLFEAPEIQIICDPSLEMMYVESHLNH 292
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.4 bits (53), Expect = 3.5
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 64 VRRRSCRVGSRQWLRYVQGRLHRR*CSSRSVSLDRGKAP 180
VRR++ +GS +R+V G R S+R+ SL + +P
Sbjct: 1100 VRRKNVNIGSSNSIRHVSGSTSR---STRTRSLSKPLSP 1135
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 4.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 207 PIPTITP*WRGLPTIEGNTARGASSPVKPAL 115
P+PT P LPT NT + P PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 24.6 bits (51), Expect = 6.1
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 131 GDDAPRAVFPSIVGRPRHQGVMVGM 205
G+ PRA F ++ P H G+++ M
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM 526
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 24.6 bits (51), Expect = 6.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +1
Query: 274 HRTHESFTNWDDMENIWHHTFYNELHVTPKEHP 372
H +ES N++DME NEL TP+E+P
Sbjct: 227 HLGNES-ENFNDMEGRAEDISSNELLPTPEEYP 258
>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 219
Score = 24.2 bits (50), Expect = 8.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 118 LAHTGAIVYYQRGNFFVAHLELVF 47
L TGAIV Y G FF + L+F
Sbjct: 56 LFRTGAIVAYILGMFFTSSFMLLF 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,891,997
Number of Sequences: 5004
Number of extensions: 42089
Number of successful extensions: 144
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -