Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0663
(412 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 134 3e-32
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 134 3e-32
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 134 3e-32
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 134 3e-32
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 134 3e-32
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 134 3e-32
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 134 3e-32
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 134 3e-32
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 132 7e-32
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 132 7e-32
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 132 7e-32
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 131 2e-31
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 127 3e-30
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 95 1e-20
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 87 4e-18
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 59 1e-09
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 54 5e-08
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 40 5e-04
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 37 0.005
AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily a... 29 1.7
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 3.0
Z49908-9|CAA90101.1| 101|Caenorhabditis elegans Hypothetical pr... 27 4.0
AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin prot... 27 4.0
AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin prot... 27 4.0
AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical ... 27 5.3
AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical ... 27 5.3
Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z81531-1|CAB04314.2| 436|Caenorhabditis elegans Hypothetical pr... 27 7.0
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 26 9.2
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 134 bits (323), Expect = 3e-32
Identities = 62/74 (83%), Positives = 64/74 (86%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFTGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVKR*GT 241
MCD+EVAALVVDNGSGMCKAGF GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 242 QQNKFLTLKYPIEH 283
+ LTLKYPIEH
Sbjct: 61 SKRGILTLKYPIEH 74
Score = 87.4 bits (207), Expect = 4e-18
Identities = 35/43 (81%), Positives = 37/43 (86%)
Frame = +1
Query: 283 HESFTNWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNPKAN 411
H TNWDDME IWHHTFYNEL V P+EHP+LLTEAPLNPKAN
Sbjct: 74 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 116
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 134 bits (323), Expect = 3e-32
Identities = 62/74 (83%), Positives = 64/74 (86%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFTGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVKR*GT 241
MCD+EVAALVVDNGSGMCKAGF GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 242 QQNKFLTLKYPIEH 283
+ LTLKYPIEH
Sbjct: 61 SKRGILTLKYPIEH 74
Score = 87.4 bits (207), Expect = 4e-18
Identities = 35/43 (81%), Positives = 37/43 (86%)
Frame = +1
Query: 283 HESFTNWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNPKAN 411
H TNWDDME IWHHTFYNEL V P+EHP+LLTEAPLNPKAN
Sbjct: 74 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 116
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 134 bits (323), Expect = 3e-32
Identities = 62/74 (83%), Positives = 64/74 (86%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFTGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVKR*GT 241
MCD+EVAALVVDNGSGMCKAGF GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 242 QQNKFLTLKYPIEH 283
+ LTLKYPIEH
Sbjct: 61 SKRGILTLKYPIEH 74
Score = 87.4 bits (207), Expect = 4e-18
Identities = 35/43 (81%), Positives = 37/43 (86%)
Frame = +1
Query: 283 HESFTNWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNPKAN 411
H TNWDDME IWHHTFYNEL V P+EHP+LLTEAPLNPKAN
Sbjct: 74 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 116
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 134 bits (323), Expect = 3e-32
Identities = 62/74 (83%), Positives = 64/74 (86%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFTGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVKR*GT 241
MCD+EVAALVVDNGSGMCKAGF GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 242 QQNKFLTLKYPIEH 283
+ LTLKYPIEH
Sbjct: 61 SKRGILTLKYPIEH 74
Score = 87.4 bits (207), Expect = 4e-18
Identities = 35/43 (81%), Positives = 37/43 (86%)
Frame = +1
Query: 283 HESFTNWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNPKAN 411
H TNWDDME IWHHTFYNEL V P+EHP+LLTEAPLNPKAN
Sbjct: 74 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 116
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 134 bits (323), Expect = 3e-32
Identities = 62/74 (83%), Positives = 64/74 (86%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFTGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVKR*GT 241
MCD+EVAALVVDNGSGMCKAGF GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 242 QQNKFLTLKYPIEH 283
+ LTLKYPIEH
Sbjct: 61 SKRGILTLKYPIEH 74
Score = 87.4 bits (207), Expect = 4e-18
Identities = 35/43 (81%), Positives = 37/43 (86%)
Frame = +1
Query: 283 HESFTNWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNPKAN 411
H TNWDDME IWHHTFYNEL V P+EHP+LLTEAPLNPKAN
Sbjct: 74 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 116
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 134 bits (323), Expect = 3e-32
Identities = 62/74 (83%), Positives = 64/74 (86%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFTGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVKR*GT 241
MCD+EVAALVVDNGSGMCKAGF GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 242 QQNKFLTLKYPIEH 283
+ LTLKYPIEH
Sbjct: 61 SKRGILTLKYPIEH 74
Score = 87.4 bits (207), Expect = 4e-18
Identities = 35/43 (81%), Positives = 37/43 (86%)
Frame = +1
Query: 283 HESFTNWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNPKAN 411
H TNWDDME IWHHTFYNEL V P+EHP+LLTEAPLNPKAN
Sbjct: 74 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 116
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 134 bits (323), Expect = 3e-32
Identities = 62/74 (83%), Positives = 64/74 (86%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFTGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVKR*GT 241
MCD+EVAALVVDNGSGMCKAGF GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 242 QQNKFLTLKYPIEH 283
+ LTLKYPIEH
Sbjct: 61 SKRGILTLKYPIEH 74
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 134 bits (323), Expect = 3e-32
Identities = 62/74 (83%), Positives = 64/74 (86%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFTGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVKR*GT 241
MCD+EVAALVVDNGSGMCKAGF GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 242 QQNKFLTLKYPIEH 283
+ LTLKYPIEH
Sbjct: 61 SKRGILTLKYPIEH 74
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 132 bits (320), Expect = 7e-32
Identities = 61/74 (82%), Positives = 64/74 (86%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFTGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVKR*GT 241
MCD++VAALVVDNGSGMCKAGF GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 242 QQNKFLTLKYPIEH 283
+ LTLKYPIEH
Sbjct: 61 SKRGILTLKYPIEH 74
Score = 87.4 bits (207), Expect = 4e-18
Identities = 35/43 (81%), Positives = 37/43 (86%)
Frame = +1
Query: 283 HESFTNWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNPKAN 411
H TNWDDME IWHHTFYNEL V P+EHP+LLTEAPLNPKAN
Sbjct: 74 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 116
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 132 bits (320), Expect = 7e-32
Identities = 61/74 (82%), Positives = 64/74 (86%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFTGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVKR*GT 241
MCD++VAALVVDNGSGMCKAGF GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 242 QQNKFLTLKYPIEH 283
+ LTLKYPIEH
Sbjct: 61 SKRGILTLKYPIEH 74
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 132 bits (320), Expect = 7e-32
Identities = 61/74 (82%), Positives = 64/74 (86%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFTGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVKR*GT 241
MCD++VAALVVDNGSGMCKAGF GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 242 QQNKFLTLKYPIEH 283
+ LTLKYPIEH
Sbjct: 61 SKRGILTLKYPIEH 74
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 131 bits (316), Expect = 2e-31
Identities = 59/74 (79%), Positives = 64/74 (86%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFTGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVKR*GT 241
MCD++VAAL++DNGSGMCKAGF GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 242 QQNKFLTLKYPIEH 283
+ LTLKYPIEH
Sbjct: 61 SKRGILTLKYPIEH 74
Score = 87.4 bits (207), Expect = 4e-18
Identities = 35/43 (81%), Positives = 37/43 (86%)
Frame = +1
Query: 283 HESFTNWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNPKAN 411
H TNWDDME IWHHTFYNEL V P+EHP+LLTEAPLNPKAN
Sbjct: 74 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 116
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 127 bits (307), Expect = 3e-30
Identities = 59/72 (81%), Positives = 62/72 (86%)
Frame = +2
Query: 68 DEEVAALVVDNGSGMCKAGFTGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVKR*GTQQ 247
+EE+AALVVDNGSGMCKAGF GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV +
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 248 NKFLTLKYPIEH 283
LTLKYPIEH
Sbjct: 62 RGILTLKYPIEH 73
Score = 85.8 bits (203), Expect = 1e-17
Identities = 33/43 (76%), Positives = 37/43 (86%)
Frame = +1
Query: 283 HESFTNWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNPKAN 411
H TNWDDME IWHHTFYNEL + P+EHP+LLTEAPLNPK+N
Sbjct: 73 HGIVTNWDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKSN 115
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 95.5 bits (227), Expect = 1e-20
Identities = 44/56 (78%), Positives = 46/56 (82%)
Frame = +2
Query: 116 KAGFTGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVKR*GTQQNKFLTLKYPIEH 283
+AGF GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYV + LTLKYPIEH
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEH 60
Score = 87.4 bits (207), Expect = 4e-18
Identities = 35/43 (81%), Positives = 37/43 (86%)
Frame = +1
Query: 283 HESFTNWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNPKAN 411
H TNWDDME IWHHTFYNEL V P+EHP+LLTEAPLNPKAN
Sbjct: 60 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 102
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 87.4 bits (207), Expect = 4e-18
Identities = 35/43 (81%), Positives = 37/43 (86%)
Frame = +1
Query: 283 HESFTNWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNPKAN 411
H TNWDDME IWHHTFYNEL V P+EHP+LLTEAPLNPKAN
Sbjct: 30 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKAN 72
Score = 42.7 bits (96), Expect = 1e-04
Identities = 20/30 (66%), Positives = 21/30 (70%)
Frame = +2
Query: 194 MVGMGQKDSYVKR*GTQQNKFLTLKYPIEH 283
MVGMGQKDSYV + LTLKYPIEH
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEH 30
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 59.3 bits (137), Expect = 1e-09
Identities = 25/66 (37%), Positives = 39/66 (59%)
Frame = +2
Query: 86 LVVDNGSGMCKAGFTGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVKR*GTQQNKFLTL 265
+V+DNGSG+ KAGF G+ P+ F + VGRP++ VM G D ++ ++
Sbjct: 11 VVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKAESNRGLFSI 70
Query: 266 KYPIEH 283
+YP+EH
Sbjct: 71 EYPMEH 76
Score = 56.4 bits (130), Expect = 8e-09
Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Frame = +1
Query: 283 HESFTNWDDMENIWHHTF-YNELHVTPKEHPILLTEAPLNPKAN 411
H NW DME IW + F ++L + P+EHP+LLT+APLNP N
Sbjct: 76 HGIVNNWSDMEKIWEYIFGQDQLKIFPEEHPVLLTDAPLNPLKN 119
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 53.6 bits (123), Expect = 5e-08
Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = +1
Query: 298 NWDDMENIWHHTFYNE-LHVTPKEHPILLTEAPLNPKAN 411
NWDDM ++W HTF E L + PKE +LLTE PLNP +N
Sbjct: 81 NWDDMAHVWDHTFGPEKLDIDPKECKLLLTEPPLNPNSN 119
Score = 48.0 bits (109), Expect = 3e-06
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +2
Query: 86 LVVDNGSGMCKAGFTGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVKR*GTQQNKFL 259
+VVDNG+G K G+ G + P +FPS+VGRP R + + KD V +Q + L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 260 TLKYPIEH 283
+ YP+++
Sbjct: 69 DINYPMDN 76
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 40.3 bits (90), Expect = 5e-04
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +1
Query: 283 HESFTNWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNPKAN 411
H +WD ME W + L P++H LLTE PLN N
Sbjct: 87 HGIVEDWDLMERYWEQCIFKYLRAEPEDHFFLLTEPPLNTPEN 129
Score = 35.1 bits (77), Expect = 0.020
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 62 MCDEEVAALVVDNGSGMCKAGFTGDDAPRAVFPSIV 169
M ++ A V+DNG+G K G+ G+ P+ + PS +
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAI 36
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 37.1 bits (82), Expect = 0.005
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 298 NWDDMENIWHHTFYNELHVTPKEHPILLTEAPLNPKA 408
+W+ E I H++ N L+ P EHP+L +E+ N +A
Sbjct: 101 DWELFEKIVEHSYENILYSNPSEHPVLFSESSWNDRA 137
>AF043699-3|AAB97566.1| 1220|Caenorhabditis elegans Temporarily
assigned gene nameprotein 203 protein.
Length = 1220
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 131 GDDAPRAVFPS--IVGRPRHQGVMVGMGQKDSYVKR*GTQQNKFLTLKYPIE-HMNHSL 298
G R + P +VG PR + +M+G ++ V LT+ P+E H +H+L
Sbjct: 109 GKTGCRRIVPGHFLVGDPRGRALMIGAVERQKLVYIMNRDSEAHLTISSPLEAHKHHTL 167
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 3.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 116 KAGFTGDDAPRAVFPSIVGRPRHQG 190
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>Z49908-9|CAA90101.1| 101|Caenorhabditis elegans Hypothetical
protein C07E3.10 protein.
Length = 101
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +2
Query: 254 FLTLKYPIEHMNHSLTGMTWRIFGIIPSTMNYMSPPKNTPSCLLKLPS 397
F+TL Y H++ ++ +FG++ + PKN +++LPS
Sbjct: 2 FVTLSYT----THTIISISLHVFGVVVGLFVWYLFPKNPTRSIVQLPS 45
>AC006638-4|AAP82654.1| 312|Caenorhabditis elegans Stomatin protein
5, isoform b protein.
Length = 312
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 148 RSVSLDRGKAPPSRRD 195
RS+ LDRG+ PP +RD
Sbjct: 63 RSLGLDRGEVPPHKRD 78
>AC006638-3|AAK85483.1| 367|Caenorhabditis elegans Stomatin protein
5, isoform a protein.
Length = 367
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 148 RSVSLDRGKAPPSRRD 195
RS+ LDRG+ PP +RD
Sbjct: 63 RSLGLDRGEVPPHKRD 78
>AL110501-1|CAB54509.1| 2129|Caenorhabditis elegans Hypothetical
protein Y79H2A.3a protein.
Length = 2129
Score = 27.1 bits (57), Expect = 5.3
Identities = 19/48 (39%), Positives = 21/48 (43%)
Frame = +1
Query: 67 RRRSCRVGSRQWLRYVQGRLHRR*CSSRSVSLDRGKAPPSRRDGRYGT 210
RR R SR RY R R SRS S R APP ++ R T
Sbjct: 1539 RRSRTRSRSRSRERYRSRRDRRSRTKSRSRSRSREAAPPPQQRSRNST 1586
>AC006620-1|AAF39780.1| 754|Caenorhabditis elegans Hypothetical
protein C51G7.3 protein.
Length = 754
Score = 27.1 bits (57), Expect = 5.3
Identities = 19/48 (39%), Positives = 21/48 (43%)
Frame = +1
Query: 67 RRRSCRVGSRQWLRYVQGRLHRR*CSSRSVSLDRGKAPPSRRDGRYGT 210
RR R SR RY R R SRS S R APP ++ R T
Sbjct: 164 RRSRTRSRSRSRERYRSRRDRRSRTKSRSRSRSREAAPPPQQRSRNST 211
>Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical
protein F56A12.1 protein.
Length = 335
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 283 HESFTNWDDMENIWHHTFYNE 345
H +++D+++IWHH Y E
Sbjct: 167 HFQQRHYNDLQDIWHHARYKE 187
>Z81531-1|CAB04314.2| 436|Caenorhabditis elegans Hypothetical
protein F36D3.1 protein.
Length = 436
Score = 26.6 bits (56), Expect = 7.0
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +1
Query: 259 DPQIPHRTHESFTNWDDMENIWHHT 333
DP +P+ + F W+D ++ HT
Sbjct: 49 DPSVPYWEEQPFKTWEDNGEVFVHT 73
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 26.2 bits (55), Expect = 9.2
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +1
Query: 67 RRRSCRVGSRQWLRYVQGRLHRR*CSSRSVSLDRGKAPPSRRDGR 201
RRRS R+ +G RR SR+ S DR ++PP RRD R
Sbjct: 79 RRRSPSRERRRSRSRDRGAPRRR---SRTRSRDRRRSPPRRRDRR 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,710,647
Number of Sequences: 27780
Number of extensions: 246822
Number of successful extensions: 835
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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