Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0663
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.33 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   4.1  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   4.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   9.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   9.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   9.5  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 0.33
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 91  SRQWLRYVQGRLHR-R*CSSRSVSLDRGKAPPSRRDGRYGTKGL 219
           SR W R   G + R     SR+  L RG+   SRR+GR+    L
Sbjct: 22  SRDWFRISAGCVSRISNRISRNRVLLRGQCISSRRNGRHNVHSL 65


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 260 SGTYFAVCLISLHKSP 213
           + TY   CL+++ KSP
Sbjct: 480 AATYMNECLLNIQKSP 495


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 107 GMCKAGFTGD 136
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/30 (30%), Positives = 11/30 (36%)
 Frame = -1

Query: 196 HHALMAGPSHDRGKHCARSIISCEAGLAHT 107
           HH+  A P H      A S       + HT
Sbjct: 433 HHSHAATPHHQHSTPLAHSSYPAAIQIGHT 462


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 106 GAIVYYQRGNFFVAHLELVF 47
           G +VY   G+F++  L ++F
Sbjct: 246 GYVVYSALGSFYIPMLVMLF 265


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 346 LHVTPKEHPILLTEAPLNPKA 408
           + +TP +  I L ++PL P A
Sbjct: 195 IRITPAKKRIKLEQSPLCPPA 215



 Score = 20.2 bits (40), Expect = 9.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 139  IISCEAGLAHTGAIVY 92
            +I   AGL  TGA VY
Sbjct: 1258 VIPTPAGLKTTGAAVY 1273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,530
Number of Sequences: 438
Number of extensions: 3099
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)