Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0662
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 130 2e-31
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 38 0.001
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 35 0.011
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 33 0.025
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 33 0.025
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 33 0.033
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 27 2.1
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 2.1
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 27 2.1
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 26 4.9
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 26 4.9
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha... 25 6.5
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 25 6.5
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 8.6
SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces... 25 8.6
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 25 8.6
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 8.6
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 130 bits (313), Expect = 2e-31
Identities = 53/73 (72%), Positives = 66/73 (90%)
Frame = -1
Query: 474 DDLSTPDEKLLGRLVRAKYDTDFYILDKYPLAVRPFYTMPDPGNPKYSNSYDMFMRGEEI 295
DD STP+E+ LG++VR KY TDFY++DKYP +VRPFYTMPDP +P+YSNSYD FM+G+EI
Sbjct: 444 DDFSTPEERALGQIVREKYHTDFYVIDKYPSSVRPFYTMPDPEDPRYSNSYDFFMKGQEI 503
Query: 294 LSGAQRIHDPDLL 256
+SGAQRIHDP+LL
Sbjct: 504 MSGAQRIHDPELL 516
Score = 82.6 bits (195), Expect = 4e-17
Identities = 35/47 (74%), Positives = 39/47 (82%)
Frame = -3
Query: 208 YIESFRLGCPPHAGGGIGLERVVMLYLGLDNIRKTSMFPRDPKRVTP 68
YI++F +GCPPHAGGGIGLERVVM YL L NIR S FPRDPKR+ P
Sbjct: 534 YIDAFAIGCPPHAGGGIGLERVVMFYLNLPNIRLASSFPRDPKRLLP 580
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = -3
Query: 235 GVDTSKIAAYIESFRLGCPPHAGGGIGLERVVMLYLGLDNIRKTSMFPRDPKRVTP 68
G+D + + E + G H G G+GLER + +R+ +FPR +R TP
Sbjct: 513 GIDPAPYYWFTEQRKYGTTEHGGCGLGLERFLAWLCDRYTVRECCLFPRFTERCTP 568
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 399 LDKYPLAVRPFYTMPDPGNPKYSNSYDMFMRG-EEILSGAQRIHD 268
L +PL ++ FY P+ + S D M EI+ G+ RI D
Sbjct: 457 LTYFPLEIKSFYMKRVVDRPELTESVDCLMPNVGEIVGGSMRISD 501
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 34.7 bits (76), Expect = 0.011
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -3
Query: 187 GCPPHAGGGIGLERVVMLYLGLDNIRKTSMFPR 89
GCPPH G +G +R+ L IR+ FP+
Sbjct: 544 GCPPHGGIALGFDRLAALLTNAPGIREVIAFPK 576
Score = 28.7 bits (61), Expect = 0.70
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -1
Query: 411 DFYILDKYPLAVRPFYTMPDPGNPKYSNSYDMFMRGEEILSGAQRIHDPDL 259
D ++L+K PL+VR + YD+ + G E+ G+ RIH+PD+
Sbjct: 478 DVHLLEKKPLSVRGLH-------------YDIVVNGIELGGGSIRIHNPDI 515
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 33.5 bits (73), Expect = 0.025
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -3
Query: 208 YIESFRLGCPPHAGGGIGLERVVMLYLGLD-NIRKTSMFPR 89
Y++ + PH G G+G+ER++ G + N+++T FPR
Sbjct: 394 YLDLMKYSNAPHGGFGLGIERLIAFLEGENTNVKETIPFPR 434
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 33.5 bits (73), Expect = 0.025
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 208 YIESFRLGCPPHAGGGIGLERVVMLYLGLDNIRKTSMF 95
++ + G PP AG G+G++R+VML G I + F
Sbjct: 488 FVHALEYGLPPTAGWGMGVDRLVMLMTGQSKISEILPF 525
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 33.1 bits (72), Expect = 0.033
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 208 YIESFRLGCPPHAGGGIGLERVVMLYLGLDNIRKTSMFP 92
+ + G PP G G+G++R+VM + IR+ +FP
Sbjct: 537 FCTALEYGLPPTGGWGMGVDRLVMFLTDSNTIREVLLFP 575
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 420 YDTDFYILDKYPLAVRPFYTMPDPGNPKYSNSY 322
+D + +DK +A+ ++ P PG P Y +Y
Sbjct: 210 HDVEEVYVDKPRMAISGWFHYPQPGEPGYDANY 242
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 435 ACPGASRPEWTGRPRLQQTLQLP 503
ACP + P + G+PR+++T +P
Sbjct: 197 ACPTNADPNYDGKPRVKRTTGIP 219
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/75 (25%), Positives = 30/75 (40%)
Frame = -1
Query: 534 AGVSAGRPELKEAGVSVGDEDDLSTPDEKLLGRLVRAKYDTDFYILDKYPLAVRPFYTMP 355
A + GR E +G+ D TP +L RL + Y + + +P
Sbjct: 353 ANIHDGR--FSENSFLIGNHADELTPYLPILARLNQKCYFMSIPCCVHDLTGAKISWALP 410
Query: 354 DPGNPKYSNSYDMFM 310
P NPK+ Y M++
Sbjct: 411 KPRNPKHGGRYAMYI 425
>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 683
Score = 25.8 bits (54), Expect = 4.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 3 FFKIDNALFRYPYNIHLYYEIY 68
F +DN+L + P N+H+Y ++
Sbjct: 145 FSSVDNSLVKGPSNVHVYDHLF 166
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 477 EDDLSTPDEKLLGRLVRAKYDTDFYILDKYPLAV 376
EDD P KL L K D+Y++ K P+A+
Sbjct: 1081 EDDNGRPLNKLFLELPSKKLYPDYYMIIKSPIAL 1114
>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/30 (26%), Positives = 14/30 (46%)
Frame = -1
Query: 105 PQCSRETRNASRRKFHNTNVYCKGI*IKRY 16
P C + N R F + ++ C G+ + Y
Sbjct: 107 PDCKKRDENGLLRHFESPHIQCAGVVVNDY 136
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 163 GIGLERVVMLYLGLDNIR 110
GIGLER+ M+ G+ +IR
Sbjct: 297 GIGLERLAMILYGIPDIR 314
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 388 IFVQDIEVRVVLGPHQPAQELLVRSGQVV 474
IF Q E +VV G H Q +RSG++V
Sbjct: 704 IFFQHDESKVVSGSHSTLQLWDIRSGKLV 732
>SPBC660.07 |ntp1||alpha,alpha-trehalase Ntp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 485 LETRTTCPLRTRSSWAGWCGPSTTRTSISWTNILSP 378
LET++T T + WA W G +T R + + ++ P
Sbjct: 540 LETKSTYESAT-AFWALWAGVATPRQAAKFVDVSLP 574
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 25.0 bits (52), Expect = 8.6
Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +1
Query: 301 LAAHEHVVRIGIFRVPGIRHGVEGSDGERIFVQ---DIEVRVVLGPHQPAQELLVRSGQV 471
+A ++++ + + R GIR G + F++ D+ VRV G + ++ +
Sbjct: 426 IALFQYLMALAVVR--GIREYAPGYENIPAFIKWPNDVYVRVDKGGINFQGKQYMKLSGI 483
Query: 472 VLVSNRHSSFLQLWTACG 525
++ SN + L L CG
Sbjct: 484 IVTSNYRKNVLHLVVGCG 501
>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 471
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 491 TPASFNSGRPAETPA 535
TP+ FNS +P ETP+
Sbjct: 401 TPSFFNSSQPIETPS 415
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,193
Number of Sequences: 5004
Number of extensions: 55570
Number of successful extensions: 195
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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