Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0662
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37) 146 9e-36
SB_24107| Best HMM Match : tRNA-synt_2 (HMM E-Value=3.4e-09) 39 0.004
SB_48310| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_18283| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32
SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_18764| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_27246| Best HMM Match : C2 (HMM E-Value=0.026) 29 3.0
SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_28703| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-36) 28 5.2
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_37977| Best HMM Match : PP2C (HMM E-Value=8.6e-08) 28 6.9
SB_48208| Best HMM Match : rve (HMM E-Value=2e-20) 27 9.1
SB_47561| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)
Length = 479
Score = 146 bits (355), Expect = 9e-36
Identities = 63/84 (75%), Positives = 75/84 (89%)
Frame = -1
Query: 507 LKEAGVSVGDEDDLSTPDEKLLGRLVRAKYDTDFYILDKYPLAVRPFYTMPDPGNPKYSN 328
L+EAG+ +G E+DLSTP+EK LG+LV+ KYDTDF+ILDKYPL +RPFYTMPDP NP SN
Sbjct: 333 LREAGIEMGYEEDLSTPNEKFLGKLVKQKYDTDFFILDKYPLCIRPFYTMPDPFNPNVSN 392
Query: 327 SYDMFMRGEEILSGAQRIHDPDLL 256
SYDMF+RGEE+LSGAQRIHDP+ L
Sbjct: 393 SYDMFIRGEEVLSGAQRIHDPEKL 416
Score = 98.7 bits (235), Expect = 3e-21
Identities = 42/57 (73%), Positives = 48/57 (84%)
Frame = -3
Query: 238 HGVDTSKIAAYIESFRLGCPPHAGGGIGLERVVMLYLGLDNIRKTSMFPRDPKRVTP 68
HG+D I +YI+SFR G PPHAGGGIGL RVVMLYL L N+RK+SMFPRDPKR+TP
Sbjct: 423 HGIDLETIKSYIDSFRYGAPPHAGGGIGLARVVMLYLDLHNVRKSSMFPRDPKRITP 479
>SB_24107| Best HMM Match : tRNA-synt_2 (HMM E-Value=3.4e-09)
Length = 187
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 235 GVDTSKIAAYIESFRLGCPPHAGGGIGLERVVMLYLGLDNIRKTSMFPRDPKRVTP 68
G+D + Y + + G PH G G+GLER + L +IR +PR R P
Sbjct: 132 GIDPAPYFWYTDQRKYGSCPHGGYGLGLERFLTWLLNRQHIRDVCFYPRFVGRCQP 187
>SB_48310| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 235 GVDTSKIAAYIESFRLGCPPHAGGGIGLERVVMLYLGLDNIRKTSMFPRDPKRVTP 68
G+D + Y + + G PH G G+GLER + L +IR +PR R P
Sbjct: 32 GIDPAPYFWYTDQRKYGSCPHGGYGLGLERFLTWLLNRQHIRDVCFYPRFVGRCQP 87
>SB_18283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 59
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 169 GGGIGLERVVMLYLGLDNIRKTSMFPRDPKRVTP 68
G +GL+R+ ML G +NIR+ FP++ + P
Sbjct: 3 GIALGLDRLAMLLAGQENIREVIAFPKNSRATEP 36
>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1449
Score = 30.7 bits (66), Expect = 0.97
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 208 YIESFRLGCPPHAGGGIGLERVVMLYLGLDNIR 110
+ S G PP AG G+G++R+ M +NI+
Sbjct: 1030 FCTSLEFGLPPTAGWGLGVDRLTMFLTDSNNIK 1062
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 431 CGPSTTRTSISWTNILSPSDPSTPC--RIPGTLNIPI 327
C PST T + + +PS PSTPC P T + PI
Sbjct: 16 CTPSTPSTPSTPSTPRTPSTPSTPCTPSTPSTPSTPI 52
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 431 CGPSTTRTSISWTNILSPSDPSTPC--RIPGTLNIPI 327
C PST T + + +PS PSTPC P T + PI
Sbjct: 381 CTPSTPSTPSTPSTPRTPSTPSTPCTPSTPSTPSTPI 417
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -2
Query: 458 RTRSSWAGWCGPSTTRTSISWTNILSPSDPSTPC--RIPGTLNIP 330
RT S+ + C PST T + ++P PSTPC PGT + P
Sbjct: 396 RTPSTPSTPCTPSTPSTP---STPITPRTPSTPCTHSTPGTPSTP 437
>SB_18764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 284
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 345 SRDPAWCRRVGRREDICPGYRSP-CRTWPAPACPGASRPEWTGRPRLQQ 488
+R+ C + R + P YR P T+PAPA P R G+P ++Q
Sbjct: 180 NREDEVCSTLVRTTSV-PAYRLPEAFTFPAPATPTLHRSTTIGQPAVKQ 227
>SB_27246| Best HMM Match : C2 (HMM E-Value=0.026)
Length = 576
Score = 29.1 bits (62), Expect = 3.0
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 331 GIFRVPGIRHGVEGSDGERIFVQDIEVRVVLGPHQPAQELLVRSGQVVLVS 483
GI PGI G D ER V D V + P A + L + GQ++LVS
Sbjct: 424 GIVSGPGIISGPVQGDEERDRVSDERVAIPRPPVSFAADELGQEGQMLLVS 474
>SB_29417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 268
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 520 RPSRVEGSWSVCWRRGRPVHSGREAPGQAGAGQVRHG 410
R RVEG C++ G+ H RE P G+G+ R G
Sbjct: 193 RGDRVEGDG--CYKCGKYGHFARECPDAGGSGRGRGG 227
>SB_28703| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-36)
Length = 397
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 51 LYYEIYGVTRFGSLGNIEVFLMLSRPRYSITTRSRPI 161
LYY+I+G+T F SLG + +++S + I +R I
Sbjct: 172 LYYQIHGITVF-SLGYLTPLIIISAVNFGIFNIARTI 207
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 194 ERLDVGRYLARVDAVEARALARRSGSWIRWAPLSISSPRMNMSYELEYLGFP 349
+R+ RYL R + ++SG +RW PL +PR +++ Y FP
Sbjct: 3868 DRMTGSRYLIRFPCLRQLLRMKKSGLLVRW-PLEEITPRFHVTI-FGYATFP 3917
>SB_37977| Best HMM Match : PP2C (HMM E-Value=8.6e-08)
Length = 662
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +3
Query: 354 PAWCRRVGRR-EDICPGYRSP 413
P W +RVGRR D C YR P
Sbjct: 537 PVWFKRVGRRLSDTCIVYRDP 557
>SB_48208| Best HMM Match : rve (HMM E-Value=2e-20)
Length = 1557
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 126 PRYSITTRSRPIPPPACGGQPSRNDSM 206
PR S+ + P+PPP G+ + SM
Sbjct: 2 PRNSMAPQPHPLPPPPSSGREKKKKSM 28
>SB_47561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 180
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = -3
Query: 586 GSTVPGGTLQI----LGSSPESWSFRRPSRVEG-SWSVCWRRGR 470
G T+ G T ++ LGSS + WS R P+ E S SV W +GR
Sbjct: 116 GLTLKGDTYRLAASKLGSSSKPWS-RPPADSESESGSVTWEQGR 158
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,163,152
Number of Sequences: 59808
Number of extensions: 477552
Number of successful extensions: 1630
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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