Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0662
(612 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical pr... 166 1e-41
Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical p... 40 0.001
U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna ... 33 0.16
U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna ... 33 0.16
U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna ... 33 0.16
AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical... 31 0.49
AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical... 31 0.49
Z99281-48|CAE18025.2| 661|Caenorhabditis elegans Hypothetical p... 31 0.86
U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily ass... 29 3.5
U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily ass... 29 3.5
Z81497-3|CAB04081.2| 593|Caenorhabditis elegans Hypothetical pr... 28 4.6
AL132951-5|CAC44307.1| 426|Caenorhabditis elegans Hypothetical ... 28 4.6
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ... 28 4.6
U64847-1|AAN84827.1| 358|Caenorhabditis elegans Hypothetical pr... 28 6.0
AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical... 28 6.0
AL032637-5|CAA21609.1| 245|Caenorhabditis elegans Hypothetical ... 28 6.0
AL032635-1|CAA21600.1| 382|Caenorhabditis elegans Hypothetical ... 28 6.0
>Z19152-1|CAA79536.1| 531|Caenorhabditis elegans Hypothetical
protein B0464.1 protein.
Length = 531
Score = 166 bits (404), Expect = 1e-41
Identities = 76/116 (65%), Positives = 90/116 (77%)
Frame = -1
Query: 603 EE*ATVGQQYRVEPFKFLDPPLKAGVSAGRPELKEAGVSVGDEDDLSTPDEKLLGRLVRA 424
+E A VG QY EPF+F +PPL L+E G+ +GDEDDLSTP EK LG+LV+
Sbjct: 353 DEIAAVGNQYPAEPFQFCEPPLILKYPDAITLLRENGIEIGDEDDLSTPVEKFLGKLVKE 412
Query: 423 KYDTDFYILDKYPLAVRPFYTMPDPGNPKYSNSYDMFMRGEEILSGAQRIHDPDLL 256
KY TDFY+LDK+PL+VRPFYTMPD + +YSNSYDMFMRGEEILSGAQRIHD D+L
Sbjct: 413 KYSTDFYVLDKFPLSVRPFYTMPDAHDERYSNSYDMFMRGEEILSGAQRIHDADML 468
Score = 98.3 bits (234), Expect = 4e-21
Identities = 42/57 (73%), Positives = 49/57 (85%)
Frame = -3
Query: 238 HGVDTSKIAAYIESFRLGCPPHAGGGIGLERVVMLYLGLDNIRKTSMFPRDPKRVTP 68
H VD +KI +YI+SF+ GCPPHAGGGIGLERV ML+LGL NIR S+FPRDPKR+TP
Sbjct: 475 HQVDLAKIQSYIDSFKYGCPPHAGGGIGLERVTMLFLGLHNIRLASLFPRDPKRLTP 531
>Z71262-12|CAA95808.1| 545|Caenorhabditis elegans Hypothetical
protein F22D6.3a protein.
Length = 545
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -3
Query: 235 GVDTSKIAAYIESFRLGCPPHAGGGIGLERVVMLYLGLDNIRKTSMFPRDPKRVTP 68
G+D+ Y++ + G PH G G+GLER + ++IR ++PR R P
Sbjct: 490 GLDSKNYYWYMDQRKYGSVPHGGYGLGLERFICWLTDTNHIRDVCLYPRFVGRCAP 545
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -1
Query: 402 ILDKYPLAVRPFYTMPDPGNPKYSNSYDMFMRG-EEILSGAQRIHDPDLL 256
+L+++P ++ FY + + + S D+ M G EI+ G+ RI D L
Sbjct: 433 LLNRFPHGIKAFYMPRCADDNELTESVDLLMPGVGEIVGGSMRIWKEDQL 482
>U41105-3|AAX88810.1| 514|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform c protein.
Length = 514
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 208 YIESFRLGCPPHAGGGIGLERVVMLYLGLDNIRKTSMFP 92
+ + G PP G G+G++R+ M+ +NI++ +FP
Sbjct: 455 FCNALEYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 493
>U41105-2|AAK68395.1| 596|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform b protein.
Length = 596
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 208 YIESFRLGCPPHAGGGIGLERVVMLYLGLDNIRKTSMFP 92
+ + G PP G G+G++R+ M+ +NI++ +FP
Sbjct: 537 FCNALEYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 575
>U41105-1|AAA82396.1| 572|Caenorhabditis elegans Lysyl (k) trna
synthetase protein1, isoform a protein.
Length = 572
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -3
Query: 208 YIESFRLGCPPHAGGGIGLERVVMLYLGLDNIRKTSMFP 92
+ + G PP G G+G++R+ M+ +NI++ +FP
Sbjct: 513 FCNALEYGLPPTGGWGMGIDRLSMILTDNNNIKEVLLFP 551
>AC024859-11|AAK29981.1| 933|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15a protein.
Length = 933
Score = 31.5 bits (68), Expect = 0.49
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 60 EIYGVTRFGSLGNIEVFLMLSRPRYSITTRSRPIPPPA-CGGQPSRND 200
E +G RF +++ L +PR+ +TTR R PPA G PS+N+
Sbjct: 24 EFHGDPRFQRPASVD----LRQPRHPLTTRGRSATPPATLHGHPSQNN 67
>AC024859-10|ABA00158.1| 832|Caenorhabditis elegans Hypothetical
protein Y71H2AM.15b protein.
Length = 832
Score = 31.5 bits (68), Expect = 0.49
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 60 EIYGVTRFGSLGNIEVFLMLSRPRYSITTRSRPIPPPA-CGGQPSRND 200
E +G RF +++ L +PR+ +TTR R PPA G PS+N+
Sbjct: 24 EFHGDPRFQRPASVD----LRQPRHPLTTRGRSATPPATLHGHPSQNN 67
>Z99281-48|CAE18025.2| 661|Caenorhabditis elegans Hypothetical
protein Y57G11C.42 protein.
Length = 661
Score = 30.7 bits (66), Expect = 0.86
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 372 PFYTMPDPGNPKYSNSYDMFMRGEEILSGA 283
P T P P +P SNS D+F R + +SGA
Sbjct: 246 PQQTPPPPASPLISNSGDVFARSRKEISGA 275
>U61952-9|AAB03165.1| 1321|Caenorhabditis elegans Temporarily
assigned gene nameprotein 137, isoform b protein.
Length = 1321
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 507 LKEAGVSVGDEDDLSTPDEKLLGR 436
L+E+G GD+DD ST DE L R
Sbjct: 474 LEESGFEPGDDDDCSTGDEMLKKR 497
>U61952-8|AAB03166.1| 1372|Caenorhabditis elegans Temporarily
assigned gene nameprotein 137, isoform a protein.
Length = 1372
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 507 LKEAGVSVGDEDDLSTPDEKLLGR 436
L+E+G GD+DD ST DE L R
Sbjct: 474 LEESGFEPGDDDDCSTGDEMLKKR 497
>Z81497-3|CAB04081.2| 593|Caenorhabditis elegans Hypothetical
protein F10C2.6 protein.
Length = 593
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -3
Query: 235 GVDTSKIAAYIESFRLGCPPHAGGGIGLERVVMLYLG----LDNIRKTSMFPR 89
G T ++ + + G PPH G +GL+R V + L +R FP+
Sbjct: 508 GEPTDEMEHLLNALSHGAPPHGGFALGLDRFVAMLTSDGNPLTPVRDVIAFPK 560
>AL132951-5|CAC44307.1| 426|Caenorhabditis elegans Hypothetical
protein Y67H2A.6 protein.
Length = 426
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -1
Query: 513 PELKEAGVSVGDEDDLSTPDEK-LLGRLVRA 424
PEL+ G+ EDD TP+EK LL +L A
Sbjct: 93 PELQVIGLYCAGEDDNLTPEEKPLLSKLTNA 123
>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
protein M01E10.2 protein.
Length = 1286
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -2
Query: 473 TTCPLRTRSSWAGWCGPSTTRTSISWTNILSPSDPSTPCRIP 348
TT RT+ +WA W P+TT T P P P R P
Sbjct: 389 TTQTPRTKQTWAPWTPPTTTTRQTPPTTQAPPITP-PPYRPP 429
>U64847-1|AAN84827.1| 358|Caenorhabditis elegans Hypothetical
protein F08F3.4 protein.
Length = 358
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +3
Query: 387 DICPGYRSPCRTWPAPACPGASRPEWTGRPR--LQQTLQL 500
DICP +S +WP +R +W P L +T+Q+
Sbjct: 300 DICPTRQSIADSWPMSLDDSEARKDWGWNPEYGLDETVQV 339
>AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical
protein Y66D12A.23 protein.
Length = 448
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 208 YIESFRLGCPPHAGGGIGLERVV 140
Y+E R G PP G GIG ER++
Sbjct: 372 YLEMRRRGQPPTGGFGIGFERML 394
>AL032637-5|CAA21609.1| 245|Caenorhabditis elegans Hypothetical
protein Y43F8C.5 protein.
Length = 245
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 425 PSTTRTSISWTNILSPSDPSTPCRIPGTLNIPIRTTCSCAARRYL 291
P+TT T+ + T + P +TP + NI I C + YL
Sbjct: 198 PTTTTTTTTTTTVKPPPPTTTPKSSDSSANINILVFCIVSITTYL 242
>AL032635-1|CAA21600.1| 382|Caenorhabditis elegans Hypothetical
protein Y51A2A.1 protein.
Length = 382
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 318 CRTNWNI*GSRDPAWCRRVGRREDICPG 401
C T+W + AWC +V + E + PG
Sbjct: 119 CPTDWMMFDRPSGAWCMKVFKTEKVLPG 146
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,183,068
Number of Sequences: 27780
Number of extensions: 342927
Number of successful extensions: 1156
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -