Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0661
         (600 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q55GD8 Cluster: Putative uncharacterized protein; n=1; ...    33   6.8  
UniRef50_Q2HDF9 Cluster: Predicted protein; n=1; Chaetomium glob...    32   9.0  

>UniRef50_Q55GD8 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 551

 Score = 32.7 bits (71), Expect = 6.8
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +1

Query: 397 PKATTSTTKTGRLRKR-SHSLRPSHFSEP--CPRHSLRPPKKDYHINR*TD 540
           PK TTS TKT R  K    + +P+H ++P   P+H+ +P +   H  + T+
Sbjct: 120 PKHTTSPTKTPRPTKTPKPTEKPNHTTKPTETPKHTTKPTETPKHTTKPTE 170


>UniRef50_Q2HDF9 Cluster: Predicted protein; n=1; Chaetomium
           globosum|Rep: Predicted protein - Chaetomium globosum
           (Soil fungus)
          Length = 498

 Score = 32.3 bits (70), Expect = 9.0
 Identities = 21/58 (36%), Positives = 25/58 (43%)
 Frame = -1

Query: 435 QSPSLCR*GSRLRKDLSATHPRRCILHFSQFSLHHPPWSVAIPSL*YPFDQH*APTSP 262
           QSPSL R  S L    S+ H +   LH+    LH+  W    P    P   H  PT P
Sbjct: 177 QSPSLYRQPSSLHHQTSSLHHQPSSLHYQPSPLHYESW----PQDCAPTPYHSLPTPP 230


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,536,151
Number of Sequences: 1657284
Number of extensions: 9913479
Number of successful extensions: 24287
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24280
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42317807226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)