Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0661
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779...    31   0.93 
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830     29   2.8  
06_03_1458 + 30301585-30301775,30302131-30302245,30302345-303024...    28   6.6  
04_03_0905 - 20722090-20722207,20722314-20722395,20722698-207228...    27   8.7  

>11_06_0578 +
           25176304-25176388,25176503-25177032,25177267-25177997,
           25178122-25178172,25178562-25178813,25178894-25179004,
           25179102-25179183,25179460-25179489
          Length = 623

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 397 PKATTSTTKTGRLRKRSHSLRPSHFSEPCPRHSLRPP 507
           P A +ST  + + RK S    PS    P PRH   PP
Sbjct: 347 PAAGSSTPSSSQARKASAPAPPSPPEPPSPRHPASPP 383


>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
          Length = 763

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 20/49 (40%), Positives = 29/49 (59%)
 Frame = +1

Query: 340 RKLREMKNTTTRMSC*KIFPKATTSTTKTGRLRKRSHSLRPSHFSEPCP 486
           RKL E+++  TR SC     + T    +  R+ +R+ SLRPSH +EP P
Sbjct: 47  RKLDELRDHITR-SC-----EITDQPRERHRMSRRTASLRPSH-AEPPP 88


>06_03_1458 +
           30301585-30301775,30302131-30302245,30302345-30302430,
           30302552-30302662,30303154-30303208,30303327-30303437,
           30304347-30304403,30304847-30305016,30305103-30305210,
           30305643-30305716,30305757-30305779,30306188-30306283,
           30306502-30306582,30306934-30307068,30307162-30307227,
           30307283-30307297
          Length = 497

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 94  RLGKLYEKLEKITIAPTPDNFGSNSKDKLYAKLERFNA 207
           RLG  ++ L+++  A  P+    +  +KL+    RFNA
Sbjct: 26  RLGVYHDVLQRLRDAGAPEALAPDFAEKLWTHFHRFNA 63


>04_03_0905 -
           20722090-20722207,20722314-20722395,20722698-20722851,
           20723026-20723089,20724282-20724404,20725326-20725452,
           20725541-20726171
          Length = 432

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +1

Query: 397 PKATTSTTKTGRLRKR----SHSLRPSHFSEPCPRHSLRPP 507
           P ATT+TT+ G   +     + S+ P    EP P H + PP
Sbjct: 135 PAATTTTTRGGDASRAQVLVAPSMAPRRHREPEPPHPVLPP 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,982,023
Number of Sequences: 37544
Number of extensions: 278789
Number of successful extensions: 730
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)