Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0661
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36160| Best HMM Match : TFIIF_alpha (HMM E-Value=0)                 28   6.6  
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_14703| Best HMM Match : Borrelia_orfA (HMM E-Value=0.14)            27   8.8  

>SB_36160| Best HMM Match : TFIIF_alpha (HMM E-Value=0)
          Length = 603

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 390 DLSEGDYLNDKDWETEEEVTFSTSKP 467
           D  E DY++D    +EEEV   T KP
Sbjct: 304 DSKEVDYMSDTSSSSEEEVNVETPKP 329


>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 526

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +1

Query: 307 RNCNGPGRMMKRKLREMKNTTTRMSC*KIFPKATTSTTKTGRLRKRSHSLRPSHFS-EPC 483
           R C    R  +  LR  + T     C  + P   T  T    LR R ++LRP  ++  PC
Sbjct: 112 RPCRYTLRPCRYTLRPCRYTLRPRYC-TLRPCRYTLRTCRYTLRPRHYTLRPRRYTLRPC 170

Query: 484 PRHSLRP 504
            R++LRP
Sbjct: 171 -RYTLRP 176


>SB_14703| Best HMM Match : Borrelia_orfA (HMM E-Value=0.14)
          Length = 558

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 49  TPIWTYVTETPSFIDRLGKLYEKLEK-ITIAPTPDNFGSNSKDKLYAKLE 195
           T +W  +TE  S I+  GK  +KLEK +       N   N+ ++  AK++
Sbjct: 194 TLVWETMTELQSVIEDRGKSIDKLEKELKDQEAKHNRQKNTLEQTVAKMK 243


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,068,511
Number of Sequences: 59808
Number of extensions: 309292
Number of successful extensions: 740
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)