Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0661
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical...    29   3.3  
AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z81048-9|CAI79126.1|  560|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81048-8|CAB51463.1|  602|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AF039570-1|AAC00000.1|  602|Caenorhabditis elegans aryl hydrocar...    28   5.9  
AC024755-2|AAL65800.1|  498|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AL117193-13|CAB55004.2|  478|Caenorhabditis elegans Hypothetical
           protein Y105C5A.24 protein.
          Length = 478

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 62  PMLPKRPLSLIVLANFTRNLKKSQ*HPHRIISDRILKISFTRSWRDLTRCRPINSSCL 235
           P     P++  +    TRNL+     PH I  + IL   + R W D    RP ++ C+
Sbjct: 240 PYTMNMPITPFLYNVATRNLR-----PHEIECNPILSNFYKRCWSDNPASRPTSADCV 292


>AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical
           protein K12B6.8 protein.
          Length = 714

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/57 (21%), Positives = 29/57 (50%)
 Frame = -1

Query: 255 NQLFFFIRQLEFIGRQRVKSLQLRVKLIFRIRSEIIRCGCYCDFFKFLVKFAKTINE 85
           N++F FI+         +++    + L + ++S+  + G YC+F ++  +    +NE
Sbjct: 118 NEIFLFIQTTLIKNMPALRNRVTLIMLTYFLKSQEKKLGTYCEFVEYFERDIIKLNE 174


>Z81048-9|CAI79126.1|  560|Caenorhabditis elegans Hypothetical
           protein C41G7.5b protein.
          Length = 560

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 397 PKATTSTTKTGRLRKR-SHSLRPSHFSEPCPRH 492
           P  T +TTK  R RK  SH + P+  S P P H
Sbjct: 408 PVPTPTTTKANRRRKENSHEIVPTIPSIPIPTH 440


>Z81048-8|CAB51463.1|  602|Caenorhabditis elegans Hypothetical
           protein C41G7.5a protein.
          Length = 602

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 397 PKATTSTTKTGRLRKR-SHSLRPSHFSEPCPRH 492
           P  T +TTK  R RK  SH + P+  S P P H
Sbjct: 450 PVPTPTTTKANRRRKENSHEIVPTIPSIPIPTH 482


>AF039570-1|AAC00000.1|  602|Caenorhabditis elegans aryl hydrocarbon
           receptor orthologAHR-1 protein.
          Length = 602

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 397 PKATTSTTKTGRLRKR-SHSLRPSHFSEPCPRH 492
           P  T +TTK  R RK  SH + P+  S P P H
Sbjct: 450 PVPTPTTTKANRRRKENSHEIVPTIPSIPIPTH 482


>AC024755-2|AAL65800.1|  498|Caenorhabditis elegans Hypothetical
           protein Y34B4A.10 protein.
          Length = 498

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 426 WETEEEVTFSTSKPLLGTMPSAFTK 500
           W  +E V  +TSKP LG   S FT+
Sbjct: 333 WNEDEAVVVTTSKPSLGYAISQFTQ 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,592,670
Number of Sequences: 27780
Number of extensions: 233435
Number of successful extensions: 616
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)