Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0657
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   1.5  
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    27   2.7  
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    26   3.5  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   3.5  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    26   4.7  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   6.2  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   6.2  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   8.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   8.2  

>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 378 YLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYV 506
           YL+ +L    PN  Y    Q A +  +DY   E IRI+E   V
Sbjct: 32  YLLRSLLANVPNALYHSQLQAACQKFQDYCDLEEIRIIEAKRV 74


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 506 GMNNEYRISLAKKGGGCPIMNIHS 577
           G++NE  I L +K G CP + I+S
Sbjct: 105 GLSNENLIKLTQKSGECPPLYINS 128


>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +1

Query: 70  YDNKYYKNLGCLIK-NAKRKKHLVEHEQEEKQWDLLDNYMVAEDPFLGPGKNQKLTLFKE 246
           Y+   Y  L  L K + K+ K + +H+   + W LLD     +D F     N+KL L   
Sbjct: 238 YEESNYTRLPKLSKKDLKKSKRVKKHDYGGEDWSLLDR-KFHDDDF----SNRKLDLTSR 292

Query: 247 IRR 255
            +R
Sbjct: 293 AKR 295


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +3

Query: 264 DTMKLIVNWSGK-EFLRETW---TRFVEDSFPIVNDQEVMDVY 380
           D ++ +  W  K + ++  W   T   E SFP++ND+E + V+
Sbjct: 230 DDLETLPKWPDKVKKMQRNWIGRTTGFEISFPLLNDKETLTVF 272


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 16  PINMPNYSYTPTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEK 159
           P+ M + S  P+     VY+    + L C   NAK  + LV+ + EE+
Sbjct: 387 PVQMVHRSALPSQDHWKVYELITRRFLACCSDNAKGAETLVQVKMEEE 434


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +3

Query: 222  PKTYPF*RNSQVKPDTMKLIVNWSGKEFLRETWTRFVEDSFPIVNDQ 362
            P T  + R+S +  +T  L ++ S K+F+RET+T   + + P V D+
Sbjct: 1018 PATPSWTRDSSLIKETTNLNLD-SDKKFVRETYTSSNQTNEPDVYDK 1063


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -2

Query: 485 SDYFVGHVVFFPPKSVLSEELVAPVGACGFEVG 387
           +D   GH +  PP+ +   +++A + +C  ++G
Sbjct: 558 ADLKFGHYMKLPPRIMFYTQMIATIWSCFVQIG 590


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 524 CIRCSSHVGWLHNSDY 477
           C RC +++GW + S Y
Sbjct: 72  CCRCHTYIGWKYVSSY 87


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 343  SPL*TTKR*WTCTSSPTSNPHAPTGATSSSLN 438
            SP+    R  +  + P SNP+ P    SS++N
Sbjct: 964  SPVAAASRISSSPNMPPSNPYTPIAVASSTVN 995


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,647,771
Number of Sequences: 5004
Number of extensions: 56805
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)