Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0657
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)          33   0.13 
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  33   0.17 
SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)                   29   2.1  
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)              28   4.9  
SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)                       28   6.5  
SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)                       28   6.5  
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)                    27   8.6  
SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)                27   8.6  

>SB_40980| Best HMM Match : ANF_receptor (HMM E-Value=0.00014)
          Length = 735

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +1

Query: 46  PTIGRTYVYDNKYYKNLGCLIKNAKRKKHLVEHEQEEKQWDLLDNYMVAE 195
           PT  RT+  D+K   ++  L+K  K +   + +E E K+W  L NYM AE
Sbjct: 87  PTFARTFAVDSKVTPSVIALLKQFKWEIVAIIYE-EWKKWVQLKNYMKAE 135


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 25/90 (27%), Positives = 40/90 (44%)
 Frame = +3

Query: 138 RT*TRGEAMGSSRQLHGCRRSLFRTGQKPKTYPF*RNSQVKPDTMKLIVNWSGKEFLRET 317
           R+ T     G S+Q+     ++F+ G+K       R   +K     + V W   E  RET
Sbjct: 123 RSNTENRFDGISKQMELLGATIFKDGKKAT-----REKALKKGIHLVTVLWV--ESCRET 175

Query: 318 WTRFVEDSFPIVNDQEVMDVYLVANLKPTR 407
             R  E+ FP++   E+    L+  LK T+
Sbjct: 176 GKRVAEELFPVIAQDELSTPLLMGKLKRTK 205


>SB_32468| Best HMM Match : Drf_FH1 (HMM E-Value=2.6)
          Length = 416

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 217 CPVLKRDLRQPCSCLEDPIASPLVHVRLGASCAWRF**DSPSFCNIYC 74
           CP + R +  PC  ++ P++ P  +V    S    +   + S C  YC
Sbjct: 71  CPYVNRTVSVPCPYVKRPVSVPCPYVNRAVSVPCPYVNRAVSVCQPYC 118


>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 379 TSSPTSNPHAPTGATSSSLNTLLGGKKTT--CPTK 477
           T S T  P  PT + +SS  +  GG KTT  C T+
Sbjct: 353 TGSRTRTPPTPTSSRASSRGSARGGAKTTKKCTTR 387


>SB_20998| Best HMM Match : Extensin_2 (HMM E-Value=0.002)
          Length = 765

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 388 PTSNPHAPTGATSSSLNTLLGGKKTTCPT 474
           P S  H+P  +T  S+NT+L  +   CP+
Sbjct: 703 PVSRYHSPRPSTCLSINTILHDQARACPS 731


>SB_42339| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 73  DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 183
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


>SB_18769| Best HMM Match : LIM (HMM E-Value=8.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 73  DNKYYKNLGCLIKNAKRKKHL-VEHEQEEKQWDLLDNY 183
           D     N  C+ K  +  +HL VE++Q +K W   DN+
Sbjct: 168 DKTVDSNKCCICKEIQNLQHLFVEYKQVKKFWSAFDNW 205


>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
          Length = 186

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 273 KLIVNWSGKEFLRETWTRFVEDSFPIVNDQEVMDVYLVANLKPTRPNRCYKFLA 434
           ++++  S ++  RE W   +    PI     + + +   +L PTRPNR  K +A
Sbjct: 115 RVVLGTSAEDLEREHWNEAMTAKKPIARWHSLREFH--NSLLPTRPNRTSKPIA 166


>SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)
          Length = 660

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 385 SPTSNPHAPTGATSSSLNTLLGGKKTTCPTK 477
           S T  P  PT + +SS  +  GG KTT  TK
Sbjct: 578 SRTRTPPTPTSSRASSRGSAGGGAKTTKTTK 608


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,265,906
Number of Sequences: 59808
Number of extensions: 440112
Number of successful extensions: 1379
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)