Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0657
         (588 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g12130.1 68415.m01306 hypothetical protein                          28   5.3  
At2g38670.1 68415.m04749 ethanolamine-phosphate cytidylyltransfe...    27   9.3  
At2g30620.1 68415.m03731 histone H1.2 nearly identical to SP|P26...    27   9.3  
At2g25800.1 68415.m03096 expressed protein                             27   9.3  

>At2g12130.1 68415.m01306 hypothetical protein
          Length = 209

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 405 VWV*GWRRGTRPSPLGRLQWGSCPQQNGSKFHAKTLC 295
           +W   WR    P  LGR  +G+C +     ++A+ LC
Sbjct: 170 LWNRSWRFVVSPDCLGRCSYGACCRNCFFYWYARELC 206


>At2g38670.1 68415.m04749 ethanolamine-phosphate
           cytidylyltransferase, putative / phosphorylethanolamine
           transferase, putative / CTP:phosphoethanolamine
           cytidylyltransferase, putative similar to SP|Q99447
           Ethanolamine-phosphate cytidylyltransferase (EC
           2.7.7.14) {Homo sapiens}; contains Pfam profile PF01467:
           Cytidylyltransferase
          Length = 421

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 497 ILRGMNNEYRISLAKKGGGCPIMNIH 574
           +L G++N+  +S AK+G   PIMN+H
Sbjct: 284 LLVGIHNDQTVS-AKRGAHRPIMNLH 308


>At2g30620.1 68415.m03731 histone H1.2 nearly identical to SP|P26569
           Histone H1.2 {Arabidopsis thaliana}
          Length = 273

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
 Frame = +1

Query: 373 TCTSSPTSNPHAPTGATSSSLNTLLGGK--KTTCPTK*SELWSHPTWDE 513
           T   SP   P A  G +  +       K  K   PTK     SHPT++E
Sbjct: 19  TTVKSPEKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEE 67


>At2g25800.1 68415.m03096 expressed protein
          Length = 996

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +3

Query: 180 LHGCRRSLFRTGQKPKTYPF*RNSQVKPDTMKLIVNWSGKEFL 308
           LH C   L    +  KT      SQV   T+  I+ W+ K  L
Sbjct: 355 LHACDSQLAEVAKDAKTTKDPEYSQVLSSTLSAILGWAEKRLL 397


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,083,684
Number of Sequences: 28952
Number of extensions: 305044
Number of successful extensions: 877
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)