Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0656
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    26   1.8  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   3.1  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   3.1  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    25   4.1  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    24   7.2  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    24   9.6  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    24   9.6  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 255 SSLVEPISVRKIENLRNMGQQTSQLKVENAPVDVEPGKEDAMLN 386
           S ++E ++ ++++N RN+GQ  S   + N P   EP    A+ N
Sbjct: 45  SGVLETVNYQQLQN-RNIGQSESPSDLTNLPYLNEPSVLHALHN 87


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 237 SSFKFAYFLNFCRFSSCRMFIYKKFVCKISHGTLNLSIVHF 115
           S F+ +  +N+  FS+        F+CKIS    NL  VHF
Sbjct: 75  SLFETSVGMNWKSFSNKEKESVTSFLCKISLEDNNLLSVHF 115


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 91  FPEIITKRKVYNRQI*SAVTNFTYEL--LVYKHSTRGKPTK 207
           +PEI+ K      ++   ++ FTY+L   +Y     G P K
Sbjct: 33  YPEIVVKHHEEFLKVCDIISTFTYQLDASIYDEKVEGVPLK 73


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = +2

Query: 272 YQCTKDR-KSEEHGTADVS 325
           Y CT++   SE+HGT DVS
Sbjct: 179 YFCTQEHDSSEKHGTIDVS 197


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 102 HNKEESVQSTNLKCRD 149
           HN EE +Q T  KCR+
Sbjct: 84  HNLEEKLQLTETKCRN 99


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 78  SLINISRNHNKEESV 122
           S+I+IS +HNKEE +
Sbjct: 44  SIIDISVHHNKEEEI 58


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 39  SKIVNVTL*ILNYSLINISRNHNKEESVQSTNL 137
           +K +N+ + I N+ L+N   NH+K+  + +  L
Sbjct: 833 TKNINIAMLIGNWILLNDHINHSKDRKLNTLAL 865


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,613,318
Number of Sequences: 5004
Number of extensions: 32756
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)