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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0656
         (388 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848...    29   1.3  
02_05_0393 + 28571232-28572254                                         27   5.2  
09_03_0056 - 11936264-11939677                                         27   6.9  
03_06_0759 - 36059872-36059928,36059934-36060125,36060241-360603...    27   6.9  
09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094,989...    26   9.1  
07_03_0935 - 22738221-22738328,22739207-22739237,22739901-227400...    26   9.1  
06_03_0063 - 16124189-16124467                                         26   9.1  
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950...    26   9.1  
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225           26   9.1  

>08_02_1315 +
           26083856-26083945,26084093-26084226,26084753-26084819,
           26085011-26085192,26085315-26085444
          Length = 200

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -2

Query: 207 FCRFSSCRMFIYKKFVCKISHGTLNLSI 124
           F  + S R  I  KFVCK+ +G L  SI
Sbjct: 65  FANYYSLRFTIISKFVCKVCYGLLCTSI 92


>02_05_0393 + 28571232-28572254
          Length = 340

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 157 TYELLVYKHSTRGKPTKIKKIREFKTTFTNRHGVRWLNLSVY 282
           T E L+      GKP++ ++  E++TTF ++ G   +N S+Y
Sbjct: 298 TVEELLGHPFVAGKPSRCERQNEWRTTFQDKTG--QVNTSIY 337


>09_03_0056 - 11936264-11939677
          Length = 1137

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +2

Query: 116 KCTIDKFKVP*LILHTNFLYINILHEENLQKLRKYANLKLLSRIDME 256
           K + D  ++P  + H + L+ + L   +L+ L KY  L+ +  I ++
Sbjct: 659 KDSSDLLRIPPKVRHVSILHFSGLSSSDLESLHKYKTLRSVVCISID 705


>03_06_0759 -
           36059872-36059928,36059934-36060125,36060241-36060348,
           36060440-36060712,36060923-36061009,36061085-36061276,
           36061841-36061969,36062087-36062200,36062446-36062490,
           36062785-36062956,36063229-36063515,36063989-36064456
          Length = 707

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 161 TNFLYINILHEENLQKLRKYANLKLLSRIDMEFAG*TYQCTKDRKSEEHGTADVS 325
           T    I  +++ + +    +  + LLS  +  F G T  C +D KSE H    V+
Sbjct: 268 TGCTVIFTMYQSSTEVFGLFDRICLLSNGNTLFFGETLSCLQDTKSETHARLQVT 322


>09_02_0496 -
           9892242-9892499,9892956-9893045,9893046-9893094,
           9893330-9893557,9894095-9894261,9894312-9894395,
           9894614-9894820,9894919-9895251,9895371-9895513,
           9895607-9895723,9895824-9895980,9896054-9896157,
           9896272-9896432,9896518-9896707,9896732-9896834,
           9896950-9897231,9897327-9897649,9897750-9897786,
           9898109-9898162,9898292-9898368,9898449-9898502,
           9898738-9898822,9900289-9900426,9900592-9900603
          Length = 1150

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 294 NLRNMGQQTSQLKVEN-APVDVEPGKEDAMLN 386
           N+R M Q+T Q+K+EN    D EP     + N
Sbjct: 597 NVREMSQETLQIKLENLTGYDQEPSSGGRVTN 628


>07_03_0935 -
           22738221-22738328,22739207-22739237,22739901-22740095,
           22740693-22740782,22740900-22741037,22741959-22742108,
           22743589-22744766
          Length = 629

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 62  IDTELLFNKYFPKS*QRGKCTIDKFKV 142
           ID  L FN++  K  + GKC++  F V
Sbjct: 320 IDPHLGFNEFMEKFFEHGKCSVKVFMV 346


>06_03_0063 - 16124189-16124467
          Length = 92

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 332 SGECTCGCGAWERR 373
           +G+C CG G WE R
Sbjct: 10  TGDCGCGIGRWEAR 23


>05_03_0356 +
           12894195-12894237,12894347-12894484,12894868-12895018,
           12895399-12895526,12895704-12895840,12896742-12896847,
           12898659-12898762,12899159-12899281,12899620-12899700,
           12900159-12900304,12902171-12902243,12902970-12903060,
           12904978-12905018,12906079-12906153,12906402-12906569,
           12907638-12907676,12907759-12907847,12908014-12908078,
           12908794-12908840,12908924-12908983,12909168-12909239,
           12910143-12910172,12910526-12910617,12910719-12910802,
           12911941-12912046,12912171-12912233,12912776-12912870,
           12913000-12913180
          Length = 875

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 273 ISVRKIENLRNMGQQTSQLKVENAPVDVEPGKEDAML 383
           ++V+K++ L+ +G+ TSQ  +  A +    GK+  +L
Sbjct: 715 LTVKKVKQLQRLGRTTSQQDISRARLWFFEGKKKILL 751


>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
          Length = 554

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 169 LVYKHSTRGKPTKIKKIREFKTTFTNRHGVRWLNLSVYE 285
           +V++      P KI+KIR+FK     +   + LN++ YE
Sbjct: 310 MVHERGVEIDPNKIEKIRDFKAPTCKKEVQKLLNIA-YE 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,393,506
Number of Sequences: 37544
Number of extensions: 173082
Number of successful extensions: 418
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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