Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0656
(388 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 29 1.3
02_05_0393 + 28571232-28572254 27 5.2
09_03_0056 - 11936264-11939677 27 6.9
03_06_0759 - 36059872-36059928,36059934-36060125,36060241-360603... 27 6.9
09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094,989... 26 9.1
07_03_0935 - 22738221-22738328,22739207-22739237,22739901-227400... 26 9.1
06_03_0063 - 16124189-16124467 26 9.1
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950... 26 9.1
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 26 9.1
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 207 FCRFSSCRMFIYKKFVCKISHGTLNLSI 124
F + S R I KFVCK+ +G L SI
Sbjct: 65 FANYYSLRFTIISKFVCKVCYGLLCTSI 92
>02_05_0393 + 28571232-28572254
Length = 340
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 157 TYELLVYKHSTRGKPTKIKKIREFKTTFTNRHGVRWLNLSVY 282
T E L+ GKP++ ++ E++TTF ++ G +N S+Y
Sbjct: 298 TVEELLGHPFVAGKPSRCERQNEWRTTFQDKTG--QVNTSIY 337
>09_03_0056 - 11936264-11939677
Length = 1137
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 116 KCTIDKFKVP*LILHTNFLYINILHEENLQKLRKYANLKLLSRIDME 256
K + D ++P + H + L+ + L +L+ L KY L+ + I ++
Sbjct: 659 KDSSDLLRIPPKVRHVSILHFSGLSSSDLESLHKYKTLRSVVCISID 705
>03_06_0759 -
36059872-36059928,36059934-36060125,36060241-36060348,
36060440-36060712,36060923-36061009,36061085-36061276,
36061841-36061969,36062087-36062200,36062446-36062490,
36062785-36062956,36063229-36063515,36063989-36064456
Length = 707
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 161 TNFLYINILHEENLQKLRKYANLKLLSRIDMEFAG*TYQCTKDRKSEEHGTADVS 325
T I +++ + + + + LLS + F G T C +D KSE H V+
Sbjct: 268 TGCTVIFTMYQSSTEVFGLFDRICLLSNGNTLFFGETLSCLQDTKSETHARLQVT 322
>09_02_0496 -
9892242-9892499,9892956-9893045,9893046-9893094,
9893330-9893557,9894095-9894261,9894312-9894395,
9894614-9894820,9894919-9895251,9895371-9895513,
9895607-9895723,9895824-9895980,9896054-9896157,
9896272-9896432,9896518-9896707,9896732-9896834,
9896950-9897231,9897327-9897649,9897750-9897786,
9898109-9898162,9898292-9898368,9898449-9898502,
9898738-9898822,9900289-9900426,9900592-9900603
Length = 1150
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +3
Query: 294 NLRNMGQQTSQLKVEN-APVDVEPGKEDAMLN 386
N+R M Q+T Q+K+EN D EP + N
Sbjct: 597 NVREMSQETLQIKLENLTGYDQEPSSGGRVTN 628
>07_03_0935 -
22738221-22738328,22739207-22739237,22739901-22740095,
22740693-22740782,22740900-22741037,22741959-22742108,
22743589-22744766
Length = 629
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 62 IDTELLFNKYFPKS*QRGKCTIDKFKV 142
ID L FN++ K + GKC++ F V
Sbjct: 320 IDPHLGFNEFMEKFFEHGKCSVKVFMV 346
>06_03_0063 - 16124189-16124467
Length = 92
Score = 26.2 bits (55), Expect = 9.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 332 SGECTCGCGAWERR 373
+G+C CG G WE R
Sbjct: 10 TGDCGCGIGRWEAR 23
>05_03_0356 +
12894195-12894237,12894347-12894484,12894868-12895018,
12895399-12895526,12895704-12895840,12896742-12896847,
12898659-12898762,12899159-12899281,12899620-12899700,
12900159-12900304,12902171-12902243,12902970-12903060,
12904978-12905018,12906079-12906153,12906402-12906569,
12907638-12907676,12907759-12907847,12908014-12908078,
12908794-12908840,12908924-12908983,12909168-12909239,
12910143-12910172,12910526-12910617,12910719-12910802,
12911941-12912046,12912171-12912233,12912776-12912870,
12913000-12913180
Length = 875
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 273 ISVRKIENLRNMGQQTSQLKVENAPVDVEPGKEDAML 383
++V+K++ L+ +G+ TSQ + A + GK+ +L
Sbjct: 715 LTVKKVKQLQRLGRTTSQQDISRARLWFFEGKKKILL 751
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 169 LVYKHSTRGKPTKIKKIREFKTTFTNRHGVRWLNLSVYE 285
+V++ P KI+KIR+FK + + LN++ YE
Sbjct: 310 MVHERGVEIDPNKIEKIRDFKAPTCKKEVQKLLNIA-YE 347
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,393,506
Number of Sequences: 37544
Number of extensions: 173082
Number of successful extensions: 418
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -