BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0656 (388 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 29 1.3 02_05_0393 + 28571232-28572254 27 5.2 09_03_0056 - 11936264-11939677 27 6.9 03_06_0759 - 36059872-36059928,36059934-36060125,36060241-360603... 27 6.9 09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094,989... 26 9.1 07_03_0935 - 22738221-22738328,22739207-22739237,22739901-227400... 26 9.1 06_03_0063 - 16124189-16124467 26 9.1 05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950... 26 9.1 05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 26 9.1 >08_02_1315 + 26083856-26083945,26084093-26084226,26084753-26084819, 26085011-26085192,26085315-26085444 Length = 200 Score = 29.1 bits (62), Expect = 1.3 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -2 Query: 207 FCRFSSCRMFIYKKFVCKISHGTLNLSI 124 F + S R I KFVCK+ +G L SI Sbjct: 65 FANYYSLRFTIISKFVCKVCYGLLCTSI 92 >02_05_0393 + 28571232-28572254 Length = 340 Score = 27.1 bits (57), Expect = 5.2 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = +1 Query: 157 TYELLVYKHSTRGKPTKIKKIREFKTTFTNRHGVRWLNLSVY 282 T E L+ GKP++ ++ E++TTF ++ G +N S+Y Sbjct: 298 TVEELLGHPFVAGKPSRCERQNEWRTTFQDKTG--QVNTSIY 337 >09_03_0056 - 11936264-11939677 Length = 1137 Score = 26.6 bits (56), Expect = 6.9 Identities = 12/47 (25%), Positives = 25/47 (53%) Frame = +2 Query: 116 KCTIDKFKVP*LILHTNFLYINILHEENLQKLRKYANLKLLSRIDME 256 K + D ++P + H + L+ + L +L+ L KY L+ + I ++ Sbjct: 659 KDSSDLLRIPPKVRHVSILHFSGLSSSDLESLHKYKTLRSVVCISID 705 >03_06_0759 - 36059872-36059928,36059934-36060125,36060241-36060348, 36060440-36060712,36060923-36061009,36061085-36061276, 36061841-36061969,36062087-36062200,36062446-36062490, 36062785-36062956,36063229-36063515,36063989-36064456 Length = 707 Score = 26.6 bits (56), Expect = 6.9 Identities = 15/55 (27%), Positives = 25/55 (45%) Frame = +2 Query: 161 TNFLYINILHEENLQKLRKYANLKLLSRIDMEFAG*TYQCTKDRKSEEHGTADVS 325 T I +++ + + + + LLS + F G T C +D KSE H V+ Sbjct: 268 TGCTVIFTMYQSSTEVFGLFDRICLLSNGNTLFFGETLSCLQDTKSETHARLQVT 322 >09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094, 9893330-9893557,9894095-9894261,9894312-9894395, 9894614-9894820,9894919-9895251,9895371-9895513, 9895607-9895723,9895824-9895980,9896054-9896157, 9896272-9896432,9896518-9896707,9896732-9896834, 9896950-9897231,9897327-9897649,9897750-9897786, 9898109-9898162,9898292-9898368,9898449-9898502, 9898738-9898822,9900289-9900426,9900592-9900603 Length = 1150 Score = 26.2 bits (55), Expect = 9.1 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = +3 Query: 294 NLRNMGQQTSQLKVEN-APVDVEPGKEDAMLN 386 N+R M Q+T Q+K+EN D EP + N Sbjct: 597 NVREMSQETLQIKLENLTGYDQEPSSGGRVTN 628 >07_03_0935 - 22738221-22738328,22739207-22739237,22739901-22740095, 22740693-22740782,22740900-22741037,22741959-22742108, 22743589-22744766 Length = 629 Score = 26.2 bits (55), Expect = 9.1 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = +2 Query: 62 IDTELLFNKYFPKS*QRGKCTIDKFKV 142 ID L FN++ K + GKC++ F V Sbjct: 320 IDPHLGFNEFMEKFFEHGKCSVKVFMV 346 >06_03_0063 - 16124189-16124467 Length = 92 Score = 26.2 bits (55), Expect = 9.1 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = +2 Query: 332 SGECTCGCGAWERR 373 +G+C CG G WE R Sbjct: 10 TGDCGCGIGRWEAR 23 >05_03_0356 + 12894195-12894237,12894347-12894484,12894868-12895018, 12895399-12895526,12895704-12895840,12896742-12896847, 12898659-12898762,12899159-12899281,12899620-12899700, 12900159-12900304,12902171-12902243,12902970-12903060, 12904978-12905018,12906079-12906153,12906402-12906569, 12907638-12907676,12907759-12907847,12908014-12908078, 12908794-12908840,12908924-12908983,12909168-12909239, 12910143-12910172,12910526-12910617,12910719-12910802, 12911941-12912046,12912171-12912233,12912776-12912870, 12913000-12913180 Length = 875 Score = 26.2 bits (55), Expect = 9.1 Identities = 11/37 (29%), Positives = 23/37 (62%) Frame = +3 Query: 273 ISVRKIENLRNMGQQTSQLKVENAPVDVEPGKEDAML 383 ++V+K++ L+ +G+ TSQ + A + GK+ +L Sbjct: 715 LTVKKVKQLQRLGRTTSQQDISRARLWFFEGKKKILL 751 >05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 Length = 554 Score = 26.2 bits (55), Expect = 9.1 Identities = 13/39 (33%), Positives = 22/39 (56%) Frame = +1 Query: 169 LVYKHSTRGKPTKIKKIREFKTTFTNRHGVRWLNLSVYE 285 +V++ P KI+KIR+FK + + LN++ YE Sbjct: 310 MVHERGVEIDPNKIEKIRDFKAPTCKKEVQKLLNIA-YE 347 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,393,506 Number of Sequences: 37544 Number of extensions: 173082 Number of successful extensions: 418 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 412 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 418 length of database: 14,793,348 effective HSP length: 74 effective length of database: 12,015,092 effective search space used: 648814968 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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