Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0656
         (388 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14117| Best HMM Match : 7tm_2 (HMM E-Value=2.4e-25)                 28   2.3  
SB_10749| Best HMM Match : DB (HMM E-Value=1.5)                        28   3.1  
SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_21285| Best HMM Match : EGF_CA (HMM E-Value=1.3e-37)                27   5.3  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    27   7.1  
SB_47616| Best HMM Match : Calx-beta (HMM E-Value=1.9)                 26   9.3  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.3  
SB_48443| Best HMM Match : RecQ5 (HMM E-Value=6.2)                     26   9.3  

>SB_14117| Best HMM Match : 7tm_2 (HMM E-Value=2.4e-25)
          Length = 294

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 15/52 (28%), Positives = 30/52 (57%)
 Frame = -3

Query: 305 VPQIFYLSYTDRFNQRTPCLFVKVVLNSRIFLIFVGFPRVECLYTRSSYVKL 150
           + QIF+LS     + +  C+FV +V++  ++L+  G+  +E +Y     VK+
Sbjct: 56  IAQIFFLSGITATDVKGVCIFVAIVIH-YMYLVAFGWMMLEGVYLYLMVVKV 106


>SB_10749| Best HMM Match : DB (HMM E-Value=1.5)
          Length = 616

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -2

Query: 231 FKFAYFLNFCRFSSCRMFIYKKFVCKISHGTLNLSIVHFPLCYDFG 94
           F F +     + S+CR  + + F+C  +H T    +V   LC   G
Sbjct: 92  FNFPHTGGKVKISNCRKLLERFFICASNHLTPTTGVVCVSLCQGQG 137


>SB_20267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 323 SAKSGECTCGCGAWERRRYAES 388
           SAKS  CTCGC    R + +ES
Sbjct: 61  SAKSCPCTCGCEDLARAKESES 82


>SB_21285| Best HMM Match : EGF_CA (HMM E-Value=1.3e-37)
          Length = 517

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 216 NTRI*NYFHE*TWSSLVEPISVRKIENLRNMGQQTSQLKVE 338
           NT+I + F++ +  +L   IS R+    RN+GQQ  ++  E
Sbjct: 18  NTQIKSPFNKTSKYNLFSSISFRRSSKARNLGQQDQRVGAE 58


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 278  CTKDRKSEEHGTADVSAKSGECTCGCGAWERRRYAES 388
            CT+D ++++    DV  KS E TC   + E    A S
Sbjct: 1684 CTQDAETQQKKLEDVQQKSKEVTCAAVSVEGSTGARS 1720


>SB_47616| Best HMM Match : Calx-beta (HMM E-Value=1.9)
          Length = 149

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -3

Query: 227 NSRIFLIFVGFPRVECL-YTRSSYVKLVTAL 138
           NSR+F+ F    R +CL Y  + YV  VT +
Sbjct: 45  NSRVFVAFCDLCRSKCLMYFNTPYVTRVTCI 75


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 330  LAETSAVPCSSDFLSFVH 277
            + ETS+V  SSDF+SF H
Sbjct: 1767 VVETSSVHVSSDFISFEH 1784


>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 158 HTNFLYINILHEENLQKLRKYANLKLLSRIDME 256
           + N++ +  LH    Q    YAN+KL+  +D+E
Sbjct: 198 YANYILLRKLHSST-QATFYYANIKLIDTVDLE 229


>SB_48443| Best HMM Match : RecQ5 (HMM E-Value=6.2)
          Length = 332

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 294 NLRNMGQQTSQLKVENAPVDVEPGKEDAMLN 386
           N RN   + ++L V N P  + P K D  LN
Sbjct: 219 NSRNGHSEDTELSVMNRPDTIPPSKSDTDLN 249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,493,801
Number of Sequences: 59808
Number of extensions: 216024
Number of successful extensions: 579
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 669365910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)