Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0656
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY204206-1|AAO39207.1|  477|Caenorhabditis elegans nuclear recep...    29   1.5  
AF039048-15|AAK68332.2|  477|Caenorhabditis elegans Nuclear horm...    29   1.5  
AF039048-14|AAM29674.1|  435|Caenorhabditis elegans Nuclear horm...    29   1.5  
U28943-7|AAK68294.1|  315|Caenorhabditis elegans Serpentine rece...    27   3.5  
U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical pr...    27   6.1  
U39667-10|AAC69005.1|  119|Caenorhabditis elegans Hypothetical p...    26   8.1  

>AY204206-1|AAO39207.1|  477|Caenorhabditis elegans nuclear receptor
           NHR-117 protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 255 SSLVEPISVRKIENLRNMGQQTSQL 329
           SS++ PISVRKI+ + N+ Q T  L
Sbjct: 217 SSILTPISVRKIKKMSNLEQLTQGL 241


>AF039048-15|AAK68332.2|  477|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 117, isoform b protein.
          Length = 477

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 255 SSLVEPISVRKIENLRNMGQQTSQL 329
           SS++ PISVRKI+ + N+ Q T  L
Sbjct: 217 SSILTPISVRKIKKMSNLEQLTQGL 241


>AF039048-14|AAM29674.1|  435|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 117, isoform a protein.
          Length = 435

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +3

Query: 255 SSLVEPISVRKIENLRNMGQQTSQL 329
           SS++ PISVRKI+ + N+ Q T  L
Sbjct: 175 SSILTPISVRKIKKMSNLEQLTQGL 199


>U28943-7|AAK68294.1|  315|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 56 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 234 SFKFAYFLNFCRFSSCRMFIYKKFVCKISHGTLNLSIVH-FPLCYDFGKYLLKSNSVSI 61
           S+ F  +     F++ R F   + +  I H T NLS+ + FP   D G +   S ++++
Sbjct: 129 SYIFPVYNMIIPFTAPRDFTTVQNLTAIEHSTYNLSLYYPFPGFSDIGNFQFVSTTINV 187


>U39996-6|AAA81092.1|  595|Caenorhabditis elegans Hypothetical
           protein C56E6.5 protein.
          Length = 595

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 9   LFFMKIVKFLSKIVNVTL*ILNYSLINISRNHNKEESVQSTNLKCRD*FYIRTSCI 176
           LFF K++ FL  ++   +   NYS  ++          Q+T+L     F++  SCI
Sbjct: 370 LFFWKLLTFLYLLLQTIVIFPNYSKTSLLSFRECNLYCQTTSLTIFSIFFLVYSCI 425


>U39667-10|AAC69005.1|  119|Caenorhabditis elegans Hypothetical
           protein C18A11.1 protein.
          Length = 119

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 159 CKISHGTLNLSIVHFPLCYDFGKYLLKSNSVSIR*HSRFY 40
           CKIS+GTL +   +FP        + K   V I+  ++ Y
Sbjct: 13  CKISNGTLEIKWYYFPTTQSLKIDIEKIQQVKIQSQAKSY 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,811,433
Number of Sequences: 27780
Number of extensions: 179233
Number of successful extensions: 508
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)