Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0656
         (388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       24   0.70 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   2.8  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   2.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   3.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   6.5  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    20   8.6  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    20   8.6  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    20   8.6  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    20   8.6  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    20   8.6  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.8 bits (49), Expect = 0.70
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 154 FTYELLVYKHSTRGKPTKIKKIREFKTTFTNRHGVRWLNLSV 279
           +TY  ++ +   R K ++  KIR     F  R  +R L ++V
Sbjct: 222 YTYTSILLEIRRRSKKSEDDKIRRSSIGFLTRAKIRTLKMTV 263


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 322 LS*KWRMHLWMWSLG 366
           LS  W+ + W W LG
Sbjct: 91  LSVFWQQYPWQWGLG 105


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 33  FLSKIVNVTL*ILNYSLINISRNH 104
           FLS I  V   I +  L+N+S NH
Sbjct: 537 FLSDINGVFTSIASLLLLNLSENH 560


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 99  FGKYLLKSNSV 67
           FG Y++K+NSV
Sbjct: 488 FGNYIIKNNSV 498


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 49  TILLRNFTIFIKNS 8
           T ++RN+T+F +NS
Sbjct: 278 TSVIRNYTLFNENS 291


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 59  LIDTELLFNKYFPKS*QRGKCTID 130
           ++ ++ L N YF      G+CT +
Sbjct: 37  ILHSDRLLNNYFKCLMDEGRCTAE 60


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 322 DVCCPMFLRFSIFRTLIGSTSEL 254
           +V CP++    +   +I S  EL
Sbjct: 316 EVLCPLYKYLQLIENVIPSNEEL 338


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 322 DVCCPMFLRFSIFRTLIGSTSEL 254
           +V CP++    +   +I S  EL
Sbjct: 331 EVLCPLYKYLQLIENVIPSNEEL 353


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 59  LIDTELLFNKYFPKS*QRGKCTID 130
           ++ ++ L N YF      G+CT +
Sbjct: 37  ILHSDRLLNNYFKCLMDEGRCTAE 60


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 59  LIDTELLFNKYFPKS*QRGKCTID 130
           ++ ++ L N YF      G+CT +
Sbjct: 37  ILHSDRLLNNYFKCLMDEGRCTAE 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,970
Number of Sequences: 438
Number of extensions: 2063
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)