Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0654
(352 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 171 4e-42
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 161 4e-39
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 148 3e-35
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 134 5e-31
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 130 8e-30
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 100 6e-21
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 91 4e-18
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 79 3e-14
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 75 4e-13
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 74 8e-13
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 73 1e-12
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 73 1e-12
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 70 1e-11
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 66 2e-10
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 64 6e-10
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 63 1e-09
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 62 3e-09
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 60 8e-09
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 60 1e-08
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 58 3e-08
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 57 1e-07
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 55 3e-07
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 54 7e-07
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.012
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 35 0.33
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 35 0.33
UniRef50_A4M0M7 Cluster: Putative uncharacterized protein; n=1; ... 33 1.3
UniRef50_Q5C2N1 Cluster: SJCHGC03405 protein; n=1; Schistosoma j... 33 1.8
UniRef50_A0VJ09 Cluster: KilA-like; n=1; Delftia acidovorans SPH... 31 5.4
UniRef50_Q2HDI7 Cluster: Putative uncharacterized protein; n=1; ... 31 5.4
UniRef50_Q1ZCC8 Cluster: Soluble lytic murein transglycosylase; ... 30 9.5
UniRef50_Q1JWT1 Cluster: Phosphate sodium symporter; n=2; Desulf... 30 9.5
UniRef50_Q9LP48 Cluster: F28N24.12 protein; n=5; Magnoliophyta|R... 30 9.5
UniRef50_A7EAJ4 Cluster: Predicted protein; n=1; Sclerotinia scl... 30 9.5
UniRef50_A5UME4 Cluster: Cobalt precorrin-6Y C5,15-methyltransfe... 30 9.5
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 171 bits (415), Expect = 4e-42
Identities = 77/113 (68%), Positives = 92/113 (81%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKFSAPRHGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE D
Sbjct: 2 SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVLSVLLDTLRPLMDYALC*LSGQEHMSEDC 340
RPGSK+NKKE+VEAVTI+ETPPMV+ ++ + EH+S++C
Sbjct: 62 RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDEC 114
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 161 bits (390), Expect = 4e-39
Identities = 68/86 (79%), Positives = 81/86 (94%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVLS 259
+PGSK+NKKE+VEAVTI+ETPPMV++
Sbjct: 62 KPGSKVNKKEVVEAVTIVETPPMVIA 87
Score = 35.5 bits (78), Expect = 0.25
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 259 GVVGYIETPHGLRALLTVWA 318
GV GY++TP G RAL T+WA
Sbjct: 88 GVTGYVDTPQGPRALTTIWA 107
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 148 bits (358), Expect = 3e-35
Identities = 68/113 (60%), Positives = 85/113 (75%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKFSAPRHG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE
Sbjct: 2 SHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVH 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVLSVLLDTLRPLMDYALC*LSGQEHMSEDC 340
RPG KI+K+E VEAVTI+ETPP+V+ ++ + EH+S++C
Sbjct: 62 RPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDEC 114
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 134 bits (323), Expect = 5e-31
Identities = 57/85 (67%), Positives = 72/85 (84%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SH KF PRHG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR+ D
Sbjct: 53 SHCKFEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVD 112
Query: 182 RPGSKINKKEIVEAVTIIETPPMVL 256
RPGSK+NKKE+VE VTI+E PPMV+
Sbjct: 113 RPGSKVNKKEVVEPVTILEAPPMVV 137
Score = 30.3 bits (65), Expect = 9.5
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 256 VGVVGYIETPHGLRALLTVWA 318
VG+VGY +TP G + + TVWA
Sbjct: 138 VGIVGYRQTPVGHKTIGTVWA 158
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 130 bits (313), Expect = 8e-30
Identities = 57/85 (67%), Positives = 70/85 (82%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
S+R FSAPRHGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++ D
Sbjct: 2 SYRNFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKVD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVL 256
RP SK+NKKE+VE V I+ETPPMV+
Sbjct: 62 RPESKMNKKEVVEGVAIVETPPMVV 86
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 100 bits (240), Expect = 6e-21
Identities = 44/66 (66%), Positives = 56/66 (84%)
Frame = +2
Query: 56 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 235
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 236 ETPPMV 253
ET P +
Sbjct: 61 ETMPFM 66
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 91.5 bits (217), Expect = 4e-18
Identities = 46/86 (53%), Positives = 59/86 (68%)
Frame = +2
Query: 8 RKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRP 187
RK APR GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV DRP
Sbjct: 4 RKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRP 62
Query: 188 GSKINKKEIVEAVTIIETPPMVLSVL 265
G + KEI VTI+ETPPM ++ +
Sbjct: 63 GRPTSGKEIFVPVTIVETPPMFVAAV 88
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 78.6 bits (185), Expect = 3e-14
Identities = 40/81 (49%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Frame = +2
Query: 23 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 202
P+ GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 203 KKEIVEAVTIIETPPM-VLSV 262
E+ +AVT++E PPM VL+V
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAV 86
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 74.5 bits (175), Expect = 4e-13
Identities = 36/83 (43%), Positives = 48/83 (57%)
Frame = +2
Query: 5 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 184
HRK ++PR GS G P+KRS + +P+ + P L F+GYK GMTHV D
Sbjct: 3 HRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDW 61
Query: 185 PGSKINKKEIVEAVTIIETPPMV 253
P S N KEI VT++E PP++
Sbjct: 62 PNSPTNGKEIYMPVTVLEVPPII 84
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 73.7 bits (173), Expect = 8e-13
Identities = 39/83 (46%), Positives = 51/83 (61%)
Frame = +2
Query: 8 RKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRP 187
RK APR GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+ DR
Sbjct: 4 RKKEAPRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMIDDRE 60
Query: 188 GSKINKKEIVEAVTIIETPPMVL 256
+EI VT+IETPPMV+
Sbjct: 61 HVDTAGQEIFVPVTVIETPPMVV 83
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 73.3 bits (172), Expect = 1e-12
Identities = 37/80 (46%), Positives = 51/80 (63%)
Frame = +2
Query: 11 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 190
K PR GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ D PG
Sbjct: 3 KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 191 SKINKKEIVEAVTIIETPPM 250
N KEI VTIIETPP+
Sbjct: 60 -LTNGKEIFMPVTIIETPPL 78
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 72.9 bits (171), Expect = 1e-12
Identities = 36/81 (44%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Frame = +2
Query: 23 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 202
P+ GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 203 KKEIVEAVTIIETPPM-VLSV 262
+EI +AVT++E PPM VL+V
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAV 86
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 69.7 bits (163), Expect = 1e-11
Identities = 35/76 (46%), Positives = 44/76 (57%)
Frame = +2
Query: 23 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 202
PR GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 203 KKEIVEAVTIIETPPM 250
E VT++ETPPM
Sbjct: 65 GMETTVPVTVVETPPM 80
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 66.1 bits (154), Expect = 2e-10
Identities = 31/81 (38%), Positives = 49/81 (60%)
Frame = +2
Query: 23 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 202
PR GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 203 KKEIVEAVTIIETPPMVLSVL 265
+EI VTI++ PPM ++ +
Sbjct: 69 GEEISVPVTILDAPPMYVAAI 89
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 64.1 bits (149), Expect = 6e-10
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 18/102 (17%)
Frame = +2
Query: 5 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVHLT 130
HRK+SAPRHGS+G P+KR+ + +++++P K KPV L
Sbjct: 3 HRKYSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-LL 61
Query: 131 AFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVL 256
++ YKAGM+H + DRP + + KEI VT+++ PP+++
Sbjct: 62 GYVAYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILI 103
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 63.3 bits (147), Expect = 1e-09
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +2
Query: 23 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 202
PR GS+ F P+KR++R +++++P++D V L AF YKAGM+H + D P S
Sbjct: 8 PRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKSPNA 64
Query: 203 KKEIVEAVTIIETPPM 250
+E+ +TI+E PP+
Sbjct: 65 GQEVFTPITILEAPPI 80
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 62.1 bits (144), Expect = 3e-09
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Frame = +2
Query: 20 APRHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 193
APR GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S
Sbjct: 6 APRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHS 61
Query: 194 KINKKEIVEAVTIIETPPM 250
EI VTI+E P M
Sbjct: 62 ATEGMEISVPVTIVEAPQM 80
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 60.5 bits (140), Expect = 8e-09
Identities = 31/79 (39%), Positives = 47/79 (59%)
Frame = +2
Query: 20 APRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 199
APR GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + I
Sbjct: 8 APRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNI 57
Query: 200 NKKEIVEAVTIIETPPMVL 256
N + + VT++E P +++
Sbjct: 58 NGERVFTPVTVLEAPELLV 76
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 60.1 bits (139), Expect = 1e-08
Identities = 32/83 (38%), Positives = 46/83 (55%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKF PR GS+GF PKKRS R K + + +++ F K THV+R +
Sbjct: 2 SHRKFEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRICN 61
Query: 182 RPGSKINKKEIVEAVTIIETPPM 250
SK + I++ VT++E PP+
Sbjct: 62 IVSSKSYQNPIIDEVTLMECPPI 84
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 58.4 bits (135), Expect = 3e-08
Identities = 29/82 (35%), Positives = 47/82 (57%)
Frame = +2
Query: 5 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDR 184
HRKFS PR GS+ + P+ R+R +++ +P + +P L A G+KAG +V DR
Sbjct: 3 HRKFSQPRRGSLAYSPRGRARSMEARIRGWP-ERQGEP-RLLAHAGFKAGCIQIVSIDDR 60
Query: 185 PGSKINKKEIVEAVTIIETPPM 250
+ K++V T++ TPP+
Sbjct: 61 EHTPNAGKQLVSLGTVLVTPPL 82
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 56.8 bits (131), Expect = 1e-07
Identities = 27/83 (32%), Positives = 48/83 (57%)
Frame = +2
Query: 8 RKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRP 187
RK +PR GS+ + P+ R++ +++A+PK D +P + A G+KAG +V DR
Sbjct: 4 RKRHSPRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDRE 62
Query: 188 GSKINKKEIVEAVTIIETPPMVL 256
K++V T++ TPP+++
Sbjct: 63 KVPNAGKQLVSLGTVLVTPPVLI 85
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 55.2 bits (127), Expect = 3e-07
Identities = 28/75 (37%), Positives = 43/75 (57%)
Frame = +2
Query: 26 RHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINK 205
R GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 8 RRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVTAG 65
Query: 206 KEIVEAVTIIETPPM 250
+ I VT+IE PP+
Sbjct: 66 QPIFVPVTVIEVPPL 80
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 54.0 bits (124), Expect = 7e-07
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Frame = +2
Query: 23 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 202
PR GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 203 KKEIVEAVTIIETPPM-VLSVLLDTLRPLMDYALC 304
+E A T+IE PP+ V++V + P LC
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLC 97
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.012
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 71 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 208
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 35.1 bits (77), Expect = 0.33
Identities = 19/56 (33%), Positives = 30/56 (53%)
Frame = -1
Query: 268 QQHRQNHRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITDKSSQMNRFARVV 101
Q ++ HRR + ++ D+ LVD T++ VG GLITD +S ++ A V
Sbjct: 469 QYSQRRHRRDVTAARAIADMILVDERDATMQVQAEVGGQGLITDIASTVSAVAGAV 524
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 35.1 bits (77), Expect = 0.33
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +2
Query: 56 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 229
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 230 IIETPPMVLSVL 265
+ETPP V++V+
Sbjct: 79 AVETPPYVIAVV 90
>UniRef50_A4M0M7 Cluster: Putative uncharacterized protein; n=1;
Geobacter bemidjiensis Bem|Rep: Putative uncharacterized
protein - Geobacter bemidjiensis Bem
Length = 430
Score = 33.1 bits (72), Expect = 1.3
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 155 MTHVVREPDRPGSKINKKEIVEAVTIIETPPMVLSVLLDTLRPLMDYAL 301
+ H EPD GS I ++ VT++ P + L+ L D LRP L
Sbjct: 230 LNHTQYEPDATGSGIYRELAPGHVTVVTIPDLRLAALRDPLRPYTSLGL 278
>UniRef50_Q5C2N1 Cluster: SJCHGC03405 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC03405 protein - Schistosoma
japonicum (Blood fluke)
Length = 321
Score = 32.7 bits (71), Expect = 1.8
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 17 SAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 139
SA H + G+Y + + RR G AF K D LTAF+
Sbjct: 225 SAQSHITSGYYQQMKYRRDDGSFSAFGKSDKHGSTWLTAFV 265
>UniRef50_A0VJ09 Cluster: KilA-like; n=1; Delftia acidovorans
SPH-1|Rep: KilA-like - Delftia acidovorans SPH-1
Length = 259
Score = 31.1 bits (67), Expect = 5.4
Identities = 13/33 (39%), Positives = 25/33 (75%), Gaps = 2/33 (6%)
Frame = -2
Query: 324 CSCPD--SQQSA*SMRGLNVSNNTDKTIGGVSM 232
C P+ S++++ +M+G+NV+N+T TIGG ++
Sbjct: 13 CRSPEASSEEASQAMKGINVANSTALTIGGTAV 45
>UniRef50_Q2HDI7 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 359
Score = 31.1 bits (67), Expect = 5.4
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 143 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIE 238
Y G+T++V P R G++++K E+ V ++E
Sbjct: 183 YSLGLTNIVSRPSRNGAELSKAEMDAGVAVLE 214
>UniRef50_Q1ZCC8 Cluster: Soluble lytic murein transglycosylase;
n=1; Psychromonas sp. CNPT3|Rep: Soluble lytic murein
transglycosylase - Psychromonas sp. CNPT3
Length = 657
Score = 30.3 bits (65), Expect = 9.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 131 AFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVLSVLL 268
AFIGY AG V R +R ++ +E + ET V +VL+
Sbjct: 587 AFIGYNAGPNRVKRWRERSNGTLDVYAFIETIPFKETRGYVQNVLM 632
>UniRef50_Q1JWT1 Cluster: Phosphate sodium symporter; n=2;
Desulfuromonadales|Rep: Phosphate sodium symporter -
Desulfuromonas acetoxidans DSM 684
Length = 740
Score = 30.3 bits (65), Expect = 9.5
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 125 LTAFIGYKAGMTHVVREPDRPGSKI-NKKEIVEAVTIIETPPMVLSVLLDTLRPLMDYAL 301
L A + Y A H V + KI N K + E +T IET + +LLD +R +D L
Sbjct: 498 LAAGLIYNAHCKHRVMSGEAEKEKIFNLKSVEEPLTAIETTFEHMGLLLDEIRTSLDSTL 557
>UniRef50_Q9LP48 Cluster: F28N24.12 protein; n=5; Magnoliophyta|Rep:
F28N24.12 protein - Arabidopsis thaliana (Mouse-ear
cress)
Length = 193
Score = 30.3 bits (65), Expect = 9.5
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 125 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 247
+TA KA HV+++P P S ++++++ A I+ PP
Sbjct: 37 ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77
>UniRef50_A7EAJ4 Cluster: Predicted protein; n=1; Sclerotinia
sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
sclerotiorum 1980
Length = 677
Score = 30.3 bits (65), Expect = 9.5
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = -1
Query: 286 EGSQCIQQHRQNHRRSLDDGDSLHDLFLVD-F*T--GTVRFSNHVGHTGLITDKSSQMNR 116
E ++CI H +R LD+ S H L ++D F T G VR H G +T K S+
Sbjct: 50 ESARCIMPHCPCNRSELDENGSEHHLVVLDVFKTNNGDVRC-----HVGKVTSKVSKAKN 104
Query: 115 F-ARV 104
F AR+
Sbjct: 105 FTARI 109
>UniRef50_A5UME4 Cluster: Cobalt precorrin-6Y
C5,15-methyltransferase, CbiE; n=1; Methanobrevibacter
smithii ATCC 35061|Rep: Cobalt precorrin-6Y
C5,15-methyltransferase, CbiE - Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861)
Length = 212
Score = 30.3 bits (65), Expect = 9.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 276 NVSNNTDKTIGGVSMMVTASTISFLLIFEPGRSGSLTT 163
NV + DK GV + + +T+S L +PG SG L T
Sbjct: 52 NVKDLLDKLEKGVDLAIEGNTVSILSTGDPGFSGVLNT 89
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 386,459,806
Number of Sequences: 1657284
Number of extensions: 7667294
Number of successful extensions: 19690
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 19202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19669
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11088517726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -